Variant report

Variant	rs62391563
Chromosome Location	chr6:14938481-14938482
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12173704	0.81[ASN][1000 genomes]
rs12176066	0.81[ASN][1000 genomes]
rs2045223	0.81[ASN][1000 genomes]
rs4285324	0.81[ASN][1000 genomes]
rs4515392	0.81[ASN][1000 genomes]
rs4715937	0.81[ASN][1000 genomes]
rs4715938	0.81[ASN][1000 genomes]
rs6917587	0.81[ASN][1000 genomes]
rs6918362	0.81[ASN][1000 genomes]
rs6930788	0.81[ASN][1000 genomes]
rs6931541	0.81[ASN][1000 genomes]
rs6942359	0.81[ASN][1000 genomes]
rs9349962	0.81[ASN][1000 genomes]
rs9370783	0.81[ASN][1000 genomes]
rs9396537	0.81[ASN][1000 genomes]
rs9396538	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14933600-14939000	Weak transcription	Stomach Mucosa	stomach
2	chr6:14933600-14944600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:14933600-14954000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:14933600-14964800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:14933800-14938600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:14933800-14969600	Weak transcription	Right Atrium	heart
7	chr6:14938000-14939400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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