Variant report

Variant	rs62393684
Chromosome Location	chr6:25635730-25635731
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4084850	0.83[ASN][1000 genomes]
rs59570431	0.87[EUR][1000 genomes]
rs60268753	0.87[EUR][1000 genomes]
rs62393679	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62393680	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62393681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62393685	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62393686	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62393710	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62393711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62393716	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62393719	0.87[EUR][1000 genomes]
rs9467560	0.83[EUR][1000 genomes]
rs9885619	0.83[ASN][1000 genomes]
rs9885888	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25629000-25638200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:25630200-25640800	Weak transcription	Pancreas	Pancrea
3	chr6:25632000-25637200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:25632000-25638400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:25634400-25635800	Enhancers	HepG2	liver
6	chr6:25634400-25636000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:25634600-25637000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:25634600-25637400	Enhancers	Fetal Intestine Large	intestine
9	chr6:25634800-25636800	Enhancers	Fetal Intestine Small	intestine
10	chr6:25635400-25636600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:25635600-25636000	Enhancers	Duodenum Mucosa	Duodenum
12	chr6:25635600-25636400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:25635600-25637600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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