Variant report

Variant	rs62393686
Chromosome Location	chr6:25637929-25637930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4084850	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59570431	0.91[EUR][1000 genomes]
rs60268753	0.91[EUR][1000 genomes]
rs62393679	0.83[ASN][1000 genomes]
rs62393680	0.92[ASN][1000 genomes]
rs62393681	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62393684	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62393685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62393710	0.87[EUR][1000 genomes]
rs62393711	0.87[EUR][1000 genomes]
rs62393716	0.82[EUR][1000 genomes]
rs62393719	0.91[EUR][1000 genomes]
rs9467560	0.87[EUR][1000 genomes]
rs9885619	0.83[ASN][1000 genomes]
rs9885888	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883488	chr6:25592489-25731691	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25629000-25638200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:25630200-25640800	Weak transcription	Pancreas	Pancrea
3	chr6:25632000-25638400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:25636600-25640600	Enhancers	HepG2	liver
5	chr6:25636600-25641800	Weak transcription	A549	lung
6	chr6:25637000-25642600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:25637200-25638600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:25637400-25638400	Weak transcription	Fetal Intestine Large	intestine
9	chr6:25637600-25639200	Enhancers	Brain Germinal Matrix	brain
10	chr6:25637800-25638600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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