Variant report

Variant	rs62401986
Chromosome Location	chr6:24834854-24834855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24832929..24835372-chr6:24837163..24838667,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs62400819	1.00[AFR][1000 genomes]
rs62400822	1.00[AFR][1000 genomes]
rs62400824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62400829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62400830	0.92[AMR][1000 genomes]
rs62400832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62400833	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv508396	chr6:24779648-24846309	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24777000-24847600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:24777000-24859600	Weak transcription	Psoas Muscle	Psoas
3	chr6:24788800-24848200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:24789200-24842600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:24798200-24841200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:24800000-24843200	Weak transcription	Liver	Liver
7	chr6:24804800-24858200	Weak transcription	Gastric	stomach
8	chr6:24806200-24842400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:24808800-24845600	Weak transcription	Fetal Stomach	stomach
10	chr6:24809800-24839200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:24817800-24836000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:24817800-24839600	Strong transcription	Primary T cells from cord blood	blood
13	chr6:24817800-24840800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr6:24817800-24854400	Strong transcription	Primary B cells from cord blood	blood
15	chr6:24817800-24855800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:24818000-24836200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:24818000-24840000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:24818000-24840600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:24818000-24840600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:24818600-24855800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:24818800-24856000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr6:24818800-24856400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:24821400-24836000	Strong transcription	Primary hematopoietic stem cells	blood
24	chr6:24822400-24840200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:24822600-24844000	Weak transcription	Fetal Heart	heart
26	chr6:24823000-24835200	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:24827400-24836200	Strong transcription	Thymus	Thymus
28	chr6:24827600-24836200	Strong transcription	HSMMtube	muscle
29	chr6:24827800-24840800	Weak transcription	Lung	lung
30	chr6:24828000-24840600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:24828000-24842600	Weak transcription	Dnd41	blood
32	chr6:24828400-24835000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:24828400-24835800	Weak transcription	Left Ventricle	heart
34	chr6:24828400-24840600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:24828800-24835800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:24829600-24835200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:24829800-24836000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr6:24829800-24836200	Strong transcription	Fetal Thymus	thymus
39	chr6:24830000-24835600	Weak transcription	Brain Germinal Matrix	brain
40	chr6:24830400-24855800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:24831000-24841200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:24831200-24837200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:24832000-24836000	Enhancers	Brain Substantia Nigra	brain
44	chr6:24832200-24839200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:24832400-24836200	Enhancers	Brain Anterior Caudate	brain
46	chr6:24832400-24859600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr6:24832600-24835800	Weak transcription	Pancreas	Pancrea
48	chr6:24832800-24838200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr6:24833000-24835200	Weak transcription	Adipose Nuclei	Adipose
50	chr6:24833000-24835600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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