Variant report

Variant	rs62400824
Chromosome Location	chr6:24765903-24765904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24763238..24766059-chr6:26119737..26122473,2	K562	blood:
2	chr6:24719491..24722153-chr6:24764728..24767268,4	K562	blood:
3	chr6:24701438..24703721-chr6:24765160..24767059,2	K562	blood:
4	chr6:24763655..24765445-chr6:24765562..24767121,2	MCF-7	breast:
5	chr6:24714616..24717353-chr6:24764940..24766713,2	K562	blood:
6	chr6:24759850..24762129-chr6:24765744..24768567,2	K562	blood:
7	chr6:24723437..24726062-chr6:24765366..24768785,3	K562	blood:
8	chr6:24719463..24723436-chr6:24763609..24766960,8	MCF-7	breast:
9	chr6:24717538..24721852-chr6:24764509..24768220,6	MCF-7	breast:
10	chr6:24718269..24722853-chr6:24759915..24768745,12	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17491730	0.82[EUR][1000 genomes]
rs62400819	1.00[AFR][1000 genomes]
rs62400821	0.82[EUR][1000 genomes]
rs62400822	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62400829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400830	0.92[AMR][1000 genomes]
rs62400832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400833	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62401986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv965630	chr6:24745410-24767271	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24760400-24775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24762200-24767200	Weak transcription	Hela-S3	cervix
3	chr6:24763800-24766600	Enhancers	Pancreas	Pancrea
4	chr6:24764200-24771400	Weak transcription	K562	blood
5	chr6:24765000-24766800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:24765200-24766800	Weak transcription	Fetal Heart	heart
7	chr6:24765400-24774400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:24765800-24766800	Weak transcription	Stomach Mucosa	stomach
9	chr6:24765800-24770600	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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