Variant report
| Variant | rs62400821 |
|---|---|
| Chromosome Location | chr6:24751216-24751217 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112308 | Chromatin interaction |
| ENSG00000224164 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11559067 | 0.80[AMR][1000 genomes] |
| rs17243276 | 0.80[AMR][1000 genomes] |
| rs17249561 | 0.80[AMR][1000 genomes] |
| rs17249729 | 0.80[AMR][1000 genomes] |
| rs17419844 | 0.92[EUR][1000 genomes] |
| rs17491730 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62400786 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62400787 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62400789 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62400790 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62400791 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62400792 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62400793 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62400795 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62400819 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62400822 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62400824 | 0.82[EUR][1000 genomes] |
| rs62400829 | 0.82[EUR][1000 genomes] |
| rs62400832 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830609 | chr6:24712086-24896647 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 68 gene(s) | inside rSNPs | diseases |
| 2 | nsv428474 | chr6:24714157-24797977 | Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 65 gene(s) | inside rSNPs | diseases |
| 3 | nsv965630 | chr6:24745410-24767271 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:24750000-24753000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
