Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24716219..24722234-chr6:24748111..24753033,8	K562	blood:
2	chr6:24748100..24750979-chr6:24751180..24754304,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GMNN-2	chr6:24749224-24749376	ENSG00000224164
2	lnc-GMNN-2	chr6:24749224-24749376	NONHSAT108122

Variant related genes	Relation type
ENSG00000218806	Chromatin interaction
ENSG00000112308	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11559067	1.00[ASN][1000 genomes]
rs16889567	1.00[ASN][1000 genomes]
rs17243276	1.00[ASN][1000 genomes]
rs17249561	1.00[ASN][1000 genomes]
rs17249729	1.00[ASN][1000 genomes]
rs17412874	1.00[ASN][1000 genomes]
rs17491730	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3212238	1.00[ASN][1000 genomes]
rs62400556	1.00[ASN][1000 genomes]
rs62400558	1.00[ASN][1000 genomes]
rs62400559	1.00[ASN][1000 genomes]
rs62400760	1.00[ASN][1000 genomes]
rs62400773	1.00[ASN][1000 genomes]
rs62400774	1.00[ASN][1000 genomes]
rs62400783	1.00[ASN][1000 genomes]
rs62400786	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400787	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400789	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400790	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400791	0.88[EUR][1000 genomes]
rs62400792	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400793	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400795	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400819	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400821	0.92[EUR][1000 genomes]
rs62400822	0.92[EUR][1000 genomes]
rs62402860	1.00[ASN][1000 genomes]
rs62402864	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv965630	chr6:24745410-24767271	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24745800-24749400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:24748000-24750800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:24749000-24750400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr6:24749200-24749400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:24749200-24750400	Enhancers	Primary neutrophils fromperipheralblood	blood

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