Variant report

Variant	rs62404319
Chromosome Location	chr6:55492653-55492654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11965285	0.81[ASN][1000 genomes]
rs11967574	0.81[ASN][1000 genomes]
rs11967626	0.81[ASN][1000 genomes]
rs12660754	0.82[ASN][1000 genomes]
rs4128949	0.81[ASN][1000 genomes]
rs4398718	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4407709	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4712106	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715557	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61392295	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62404294	0.96[ASN][1000 genomes]
rs62404295	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62404312	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404313	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404314	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404315	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404316	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404337	0.81[ASN][1000 genomes]
rs62404356	0.81[ASN][1000 genomes]
rs62404357	0.81[ASN][1000 genomes]
rs6904333	0.81[ASN][1000 genomes]
rs6915643	0.81[ASN][1000 genomes]
rs6915810	0.82[ASN][1000 genomes]
rs6918628	0.97[ASN][1000 genomes]
rs6923458	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72988066	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742169	0.96[ASN][1000 genomes]
rs7744070	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7763362	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7763981	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3474008	chr6:55491689-55494295	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3474009	chr6:55491689-55494295	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3393454	chr6:55491818-55494366	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3429791	chr6:55491968-55494116	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3448204	chr6:55492428-55493097	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3508049	chr6:55492439-55493150	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3508048	chr6:55492556-55493057	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55479400-55504000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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