Variant report

Variant	rs62404295
Chromosome Location	chr6:55473820-55473821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11961749	0.82[ASN][1000 genomes]
rs11965285	0.83[ASN][1000 genomes]
rs11967574	0.83[ASN][1000 genomes]
rs11967626	0.83[ASN][1000 genomes]
rs11970157	0.82[ASN][1000 genomes]
rs12660754	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4128949	0.84[ASN][1000 genomes]
rs4398718	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4407709	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4618527	0.82[ASN][1000 genomes]
rs4712106	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4715557	1.00[ASN][1000 genomes]
rs4715559	0.82[ASN][1000 genomes]
rs61392295	0.84[ASN][1000 genomes]
rs62404294	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62404312	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62404313	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62404314	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62404315	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62404316	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62404319	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62404337	0.84[ASN][1000 genomes]
rs62404356	0.83[ASN][1000 genomes]
rs62404357	0.83[ASN][1000 genomes]
rs6904333	0.84[ASN][1000 genomes]
rs6908831	0.83[ASN][1000 genomes]
rs6915643	0.83[ASN][1000 genomes]
rs6915810	0.85[ASN][1000 genomes]
rs6918628	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918673	0.82[ASN][1000 genomes]
rs6923458	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6939258	0.81[ASN][1000 genomes]
rs72988066	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7742169	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7744070	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7763362	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7763981	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv948358	chr6:55351282-55477277	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526284	chr6:55473294-55486126	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55463600-55474600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:55472400-55474600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:55473600-55474000	Enhancers	Fetal Muscle Trunk	muscle
4	chr6:55473600-55474400	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links