Variant report

Variant	rs62405903
Chromosome Location	chr6:33476985-33476986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs62405868	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62405888	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62405901	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62405902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62405905	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62405924	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405929	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv521506	chr6:33468151-33480738	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33474200-33477000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:33474400-33477000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:33474400-33481200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:33474600-33477000	Weak transcription	Fetal Heart	heart
5	chr6:33476000-33477200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:33476400-33477000	Weak transcription	Spleen	Spleen
7	chr6:33476600-33477200	Flanking Active TSS	GM12878-XiMat	blood
8	chr6:33476600-33477600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:33476600-33477600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:33476600-33479800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:33476800-33477000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:33476800-33477000	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:33476800-33477000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:33476800-33477000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:33476800-33477000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr6:33476800-33477000	Active TSS	Right Atrium	heart
17	chr6:33476800-33477000	Active TSS	Stomach Smooth Muscle	stomach
18	chr6:33476800-33477200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr6:33476800-33477200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:33476800-33477200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:33476800-33477200	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr6:33476800-33477200	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr6:33476800-33477200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:33476800-33477200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:33476800-33477200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:33476800-33477200	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr6:33476800-33477200	Flanking Active TSS	Fetal Kidney	kidney
28	chr6:33476800-33477200	Active TSS	Rectal Smooth Muscle	rectum
29	chr6:33476800-33477200	Bivalent/Poised TSS	NHDF-Ad	bronchial
30	chr6:33476800-33477200	Active TSS	Osteobl	bone
31	chr6:33476800-33477400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:33476800-33477400	Active TSS	H9 Cell Line	embryonic stem cell
33	chr6:33476800-33477400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr6:33476800-33477400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr6:33476800-33477400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:33476800-33477400	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr6:33476800-33477400	Active TSS	Colonic Mucosa	Colon
38	chr6:33476800-33477400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr6:33476800-33477400	Enhancers	Placenta	Placenta
40	chr6:33476800-33477400	Enhancers	Ovary	ovary
41	chr6:33476800-33477400	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr6:33476800-33477400	Enhancers	Right Ventricle	heart
43	chr6:33476800-33477400	Active TSS	HMEC	breast
44	chr6:33476800-33477600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr6:33476800-33477600	Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr6:33476800-33477600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:33476800-33477600	Enhancers	K562	blood
48	chr6:33476800-33477800	Active TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links