Variant report

Variant	rs62405929
Chromosome Location	chr6:33512143-33512144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34308820	0.81[ASN][1000 genomes]
rs35347341	0.81[ASN][1000 genomes]
rs55707130	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55753118	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56020347	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56069946	0.85[ASN][1000 genomes]
rs62405902	0.85[EUR][1000 genomes]
rs62405903	0.85[EUR][1000 genomes]
rs62405905	0.85[EUR][1000 genomes]
rs62405924	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62405945	0.83[ASN][1000 genomes]
rs7776058	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33501600-33512800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:33511200-33515400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:33512000-33512400	Bivalent Enhancer	HepG2	liver
4	chr6:33512000-33516000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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