Variant report

Variant	rs62406520
Chromosome Location	chr6:36920629-36920630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2140937	1.00[AFR][1000 genomes]
rs62406524	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72848022	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv519499	chr6:36915906-36924102	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522653	chr6:36915906-36925774	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62406520	PI16	cis	brain	BrainEAC

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
2	chr6:36916000-36921400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:36916000-36923000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:36916200-36920800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:36916200-36920800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:36916200-36921200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:36916200-36921200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:36916200-36921600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:36916200-36922600	Weak transcription	Brain Anterior Caudate	brain
10	chr6:36916200-36923000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:36916400-36921400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:36916400-36921400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:36916400-36921400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:36916600-36921200	Weak transcription	Primary T cells from cord blood	blood
15	chr6:36916600-36921800	Weak transcription	Dnd41	blood
16	chr6:36916800-36921200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:36917000-36921000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:36917000-36921400	Weak transcription	Thymus	Thymus
19	chr6:36917200-36920800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:36917200-36920800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:36917400-36921400	Weak transcription	Fetal Thymus	thymus
22	chr6:36917600-36921200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:36917600-36922400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:36917600-36931200	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:36918000-36921400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:36918000-36923000	Weak transcription	Brain Substantia Nigra	brain
27	chr6:36918000-36924000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:36918200-36921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:36918200-36921600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:36918200-36922800	Weak transcription	Hela-S3	cervix
31	chr6:36918200-36923000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:36918200-36923000	Weak transcription	NHEK	skin
33	chr6:36918200-36923200	Weak transcription	NH-A	brain
34	chr6:36918200-36927800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:36918200-36928400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:36918600-36921600	Weak transcription	HUVEC	blood vessel
37	chr6:36920400-36921400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:36920600-36921000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:36920600-36921400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:36920600-36921800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:36920600-36922000	Enhancers	Primary B cells from cord blood	blood

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