Variant report
| Variant | rs62413605 |
|---|---|
| Chromosome Location | chr6:49658746-49658747 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49601567..49605269-chr6:49656290..49660254,4 | K562 | blood: | |
| 2 | chr6:49656785..49659064-chr6:49663124..49665693,2 | MCF-7 | breast: | |
| 3 | chr6:49643917..49646821-chr6:49657728..49659478,2 | K562 | blood: | |
| 4 | chr6:49653789..49657666-chr6:49658203..49660356,4 | K562 | blood: | |
| 5 | chr6:49656231..49658922-chr6:49681368..49683254,2 | MCF-7 | breast: | |
| 6 | chr6:49656878..49659243-chr6:49661799..49664197,3 | K562 | blood: | |
| 7 | chr6:49655999..49658750-chr6:49665374..49667743,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112077 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10485289 | 1.00[ASN][1000 genomes] |
| rs1089533 | 0.85[ASN][1000 genomes] |
| rs10948519 | 1.00[ASN][1000 genomes] |
| rs12110540 | 1.00[ASN][1000 genomes] |
| rs1407111 | 1.00[ASN][1000 genomes] |
| rs16869310 | 1.00[ASN][1000 genomes] |
| rs16879580 | 1.00[ASN][1000 genomes] |
| rs16879592 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2396916 | 1.00[ASN][1000 genomes] |
| rs360556 | 0.85[ASN][1000 genomes] |
| rs360561 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4711933 | 0.82[ASN][1000 genomes] |
| rs4711934 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs521286 | 0.85[ASN][1000 genomes] |
| rs570395 | 0.81[ASN][1000 genomes] |
| rs61029183 | 1.00[ASN][1000 genomes] |
| rs62412401 | 0.80[EUR][1000 genomes] |
| rs62412403 | 0.80[EUR][1000 genomes] |
| rs62412441 | 1.00[ASN][1000 genomes] |
| rs62412443 | 1.00[ASN][1000 genomes] |
| rs62412444 | 1.00[ASN][1000 genomes] |
| rs62412445 | 1.00[ASN][1000 genomes] |
| rs62412446 | 1.00[ASN][1000 genomes] |
| rs62412447 | 1.00[ASN][1000 genomes] |
| rs62412449 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62412451 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62412452 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62412453 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62413578 | 1.00[ASN][1000 genomes] |
| rs62413582 | 1.00[ASN][1000 genomes] |
| rs62413583 | 1.00[ASN][1000 genomes] |
| rs681283 | 0.81[ASN][1000 genomes] |
| rs9296619 | 1.00[ASN][1000 genomes] |
| rs9357633 | 0.90[ASN][1000 genomes] |
| rs9381814 | 1.00[ASN][1000 genomes] |
| rs9395523 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
