Variant report
| Variant | rs681283 |
|---|---|
| Chromosome Location | chr6:49673195-49673196 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49671946..49673936-chr6:49674455..49676625,2 | K562 | blood: | |
| 2 | chr6:49672074..49677551-chr6:49678532..49683707,8 | K562 | blood: | |
| 3 | chr6:49653286..49655370-chr6:49672668..49674772,2 | K562 | blood: | |
| 4 | chr6:49652949..49655370-chr6:49673063..49674772,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000124490 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10485289 | 0.81[ASN][1000 genomes] |
| rs1089533 | 0.95[ASN][1000 genomes] |
| rs10948519 | 0.81[ASN][1000 genomes] |
| rs12110540 | 0.81[ASN][1000 genomes] |
| rs12204475 | 0.93[CEU][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs1407111 | 0.81[ASN][1000 genomes] |
| rs16869310 | 0.81[ASN][1000 genomes] |
| rs16879580 | 0.81[ASN][1000 genomes] |
| rs16879592 | 0.81[ASN][1000 genomes] |
| rs2396916 | 0.81[ASN][1000 genomes] |
| rs360556 | 0.95[ASN][1000 genomes] |
| rs360561 | 0.81[ASN][1000 genomes] |
| rs4711934 | 0.81[ASN][1000 genomes] |
| rs521286 | 0.95[ASN][1000 genomes] |
| rs570395 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61029183 | 0.81[ASN][1000 genomes] |
| rs62412441 | 0.81[ASN][1000 genomes] |
| rs62412443 | 0.81[ASN][1000 genomes] |
| rs62412444 | 0.81[ASN][1000 genomes] |
| rs62412445 | 0.81[ASN][1000 genomes] |
| rs62412446 | 0.81[ASN][1000 genomes] |
| rs62412447 | 0.81[ASN][1000 genomes] |
| rs62412449 | 0.81[ASN][1000 genomes] |
| rs62412451 | 0.81[ASN][1000 genomes] |
| rs62412452 | 0.81[ASN][1000 genomes] |
| rs62412453 | 0.81[ASN][1000 genomes] |
| rs62413578 | 0.81[ASN][1000 genomes] |
| rs62413582 | 0.81[ASN][1000 genomes] |
| rs62413583 | 0.81[ASN][1000 genomes] |
| rs62413605 | 0.81[ASN][1000 genomes] |
| rs9296619 | 0.81[ASN][1000 genomes] |
| rs9296621 | 0.87[EUR][1000 genomes] |
| rs9381814 | 0.81[ASN][1000 genomes] |
| rs9395523 | 0.81[ASN][1000 genomes] |
| rs9473652 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49672600-49681800 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
