Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10080526	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10949013	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10949014	0.82[ASN][1000 genomes]
rs13210430	0.84[ASN][1000 genomes]
rs16888410	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16888420	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16888435	0.94[ASN][1000 genomes]
rs16888439	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34331825	0.80[ASN][1000 genomes]
rs62415953	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62415955	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62415956	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62418083	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6900622	0.82[ASN][1000 genomes]
rs6905517	0.85[AFR][1000 genomes]
rs6905598	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6906645	0.82[ASN][1000 genomes]
rs6918565	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9464431	0.87[AFR][1000 genomes]
rs9475804	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475805	0.82[ASN][1000 genomes]
rs9475808	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs984684	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1034095	chr6:57102042-57162808	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57146600-57149600	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:57147600-57149400	Enhancers	Colon Smooth Muscle	Colon
3	chr6:57147600-57152800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:57148200-57152600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:57148400-57152600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:57148400-57152800	Weak transcription	NHEK	skin
7	chr6:57149000-57163800	Weak transcription	Fetal Stomach	stomach

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