Variant report

Variant	rs10080526
Chromosome Location	chr6:57122994-57122995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57111234..57114004-chr6:57121619..57123505,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10949013	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs10949014	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs16888410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16888420	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888435	0.95[ASN][1000 genomes]
rs16888439	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs223289	0.83[CHB][hapmap]
rs62415953	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62415955	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62415956	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62418081	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62418083	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6900622	0.81[ASN][1000 genomes]
rs6905598	0.81[ASN][1000 genomes]
rs6906645	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs6918565	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9357941	1.00[TSI][hapmap]
rs9396263	1.00[TSI][hapmap]
rs9475804	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9475805	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9475808	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs984684	0.93[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1034095	chr6:57102042-57162808	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528165	chr6:57104266-57130574	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57118400-57126600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:57118400-57128200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:57121400-57124200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:57121800-57123000	Enhancers	Placenta	Placenta
5	chr6:57122400-57123000	Active TSS	Fetal Kidney	kidney
6	chr6:57122400-57123000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:57122400-57123200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:57122400-57123200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:57122400-57123200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr6:57122400-57123200	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr6:57122400-57123200	Enhancers	NH-A	brain
12	chr6:57122400-57123200	Flanking Active TSS	NHLF	lung
13	chr6:57122400-57123200	Flanking Active TSS	Osteobl	bone
14	chr6:57122400-57123600	Enhancers	Fetal Stomach	stomach
15	chr6:57122600-57123000	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr6:57122600-57123000	Active TSS	Rectal Smooth Muscle	rectum
17	chr6:57122600-57123200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:57122600-57123200	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr6:57122600-57123400	Active TSS	Ovary	ovary
20	chr6:57122800-57123000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:57122800-57123200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:57122800-57123200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:57122800-57123200	Active TSS	Adipose Nuclei	Adipose
24	chr6:57122800-57123200	Active TSS	Right Atrium	heart
25	chr6:57122800-57123200	Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr6:57122800-57123200	Flanking Active TSS	HSMM	muscle
27	chr6:57122800-57123200	Flanking Active TSS	HSMMtube	muscle
28	chr6:57122800-57123200	Active TSS	NHDF-Ad	bronchial
29	chr6:57122800-57123400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:57122800-57123400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:57122800-57123400	Active TSS	Aorta	Aorta
32	chr6:57122800-57123600	Active TSS	Colon Smooth Muscle	Colon

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