Variant report

Variant	rs9396263
Chromosome Location	chr6:57070684-57070685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:57062290..57064977-chr6:57069550..57072022,3	MCF-7	breast:
2	chr6:57059583..57062369-chr6:57070528..57072593,2	K562	blood:
3	chr6:57067110..57071080-chr6:57071406..57075430,5	K562	blood:
4	chr6:57070005..57071820-chr6:57075486..57077101,2	K562	blood:
5	chr6:57065751..57068051-chr6:57069348..57071152,2	K562	blood:
6	chr6:57052990..57054796-chr6:57070067..57072513,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1002996	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1040461	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12175661	0.83[AMR][1000 genomes]
rs1556245	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16888316	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1993118	0.83[AMR][1000 genomes]
rs2273919	0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3757296	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4510664	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58705880	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61740375	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62415861	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62415862	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62415863	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62415864	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62415865	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62415878	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62415879	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62415880	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62415883	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62415884	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62415885	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62415933	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62417430	0.86[AMR][1000 genomes]
rs6459179	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6907653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6932278	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72867038	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72867054	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72867059	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72867062	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7749960	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7766234	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7771328	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9296860	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9296861	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9296862	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs9349844	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9349845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9357939	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9357940	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9357941	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367706	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9367707	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9367709	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9367710	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9367711	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9367713	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9367714	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9370559	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9370561	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9370562	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9370563	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9370567	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9370568	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9382684	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9382685	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9382686	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9382691	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9396255	0.86[AMR][1000 genomes]
rs9396258	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9396260	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs9396261	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9464416	0.95[ASN][1000 genomes]
rs9464418	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9464419	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9475768	0.85[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes]
rs9475774	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9475778	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9475781	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9475782	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9475783	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9475788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3430228	chr6:56830972-57079281	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv462949	chr6:56973902-57098973	ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv603190	chr6:56973902-57098973	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57038000-57081600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:57038400-57072800	Weak transcription	Pancreas	Pancrea
3	chr6:57038400-57079600	Weak transcription	Fetal Brain Female	brain
4	chr6:57039000-57086000	Weak transcription	Thymus	Thymus
5	chr6:57048200-57072200	Weak transcription	Fetal Brain Male	brain
6	chr6:57049000-57072600	Weak transcription	Psoas Muscle	Psoas
7	chr6:57049400-57085000	Weak transcription	Aorta	Aorta
8	chr6:57050800-57072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:57056600-57086000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:57057200-57081200	Weak transcription	HMEC	breast
11	chr6:57057600-57081200	Weak transcription	Fetal Intestine Small	intestine
12	chr6:57057800-57071400	Weak transcription	Fetal Thymus	thymus
13	chr6:57058000-57074200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:57058000-57080800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:57058200-57072800	Weak transcription	K562	blood
16	chr6:57058200-57079200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:57058200-57085800	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:57058400-57071400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:57058400-57072800	Weak transcription	GM12878-XiMat	blood
20	chr6:57058400-57078800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:57058800-57071200	Weak transcription	HUVEC	blood vessel
22	chr6:57058800-57081000	Weak transcription	NHEK	skin
23	chr6:57058800-57084000	Weak transcription	Dnd41	blood
24	chr6:57059200-57084000	Weak transcription	Hela-S3	cervix
25	chr6:57060600-57080600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:57061400-57070800	Weak transcription	Ovary	ovary
27	chr6:57061600-57079600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:57062600-57084800	Weak transcription	HSMM	muscle
29	chr6:57064000-57071200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:57064200-57077800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:57064400-57070800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:57064400-57071200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:57064400-57077400	Weak transcription	Fetal Stomach	stomach
34	chr6:57064400-57077400	Weak transcription	HepG2	liver
35	chr6:57064400-57079000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:57064400-57079400	Weak transcription	NHLF	lung
37	chr6:57064400-57084000	Weak transcription	NH-A	brain
38	chr6:57064400-57085000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:57064400-57086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:57065000-57085000	Weak transcription	A549	lung
41	chr6:57065800-57070800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:57067400-57070800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:57067400-57071200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:57067400-57076800	Weak transcription	Fetal Kidney	kidney
45	chr6:57067400-57078600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:57067600-57073400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:57067600-57085800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:57068400-57072000	Strong transcription	NHDF-Ad	bronchial
49	chr6:57068800-57070800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:57070000-57071600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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