Variant report

Variant	rs62418738
Chromosome Location	chr6:119855299-119855300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119847994..119850529-chr6:119852799..119855892,3	K562	blood:
2	chr6:119847994..119850425-chr6:119853510..119855892,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10485004	1.00[ASN][1000 genomes]
rs10485005	1.00[ASN][1000 genomes]
rs11153832	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195793	0.81[AMR][1000 genomes]
rs12197734	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201876	1.00[ASN][1000 genomes]
rs12203478	1.00[ASN][1000 genomes]
rs12206086	1.00[ASN][1000 genomes]
rs12207914	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208820	1.00[ASN][1000 genomes]
rs12209160	1.00[ASN][1000 genomes]
rs13194194	1.00[ASN][1000 genomes]
rs13201608	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201736	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208284	1.00[ASN][1000 genomes]
rs13217373	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499571	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628078	1.00[ASN][1000 genomes]
rs17628412	1.00[ASN][1000 genomes]
rs17628430	1.00[ASN][1000 genomes]
rs17628459	1.00[ASN][1000 genomes]
rs17628530	1.00[ASN][1000 genomes]
rs2133533	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153824	1.00[ASN][1000 genomes]
rs62418722	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418723	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66623281	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899913	1.00[ASN][1000 genomes]
rs6918348	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919823	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923537	1.00[ASN][1000 genomes]
rs6923854	1.00[ASN][1000 genomes]
rs6927955	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954953	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7743094	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743821	1.00[ASN][1000 genomes]
rs7756933	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7774848	0.83[EUR][1000 genomes]
rs870891	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1018182	chr6:119833609-119866803	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119854000-119855400	Enhancers	NHLF	lung
2	chr6:119854000-119855600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:119854200-119855400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:119854200-119855400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:119854200-119855400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:119854200-119855400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:119854200-119855400	Enhancers	Adipose Nuclei	Adipose
8	chr6:119854200-119855600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:119854200-119855600	Enhancers	Colon Smooth Muscle	Colon
10	chr6:119854200-119855600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:119854200-119855800	Enhancers	Rectal Smooth Muscle	rectum
12	chr6:119854200-119856800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:119854200-119856800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:119854200-119856800	Enhancers	HMEC	breast
15	chr6:119854200-119857000	Enhancers	NHEK	skin
16	chr6:119854400-119855400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:119854400-119855400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:119854400-119855400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:119854400-119855400	Enhancers	Fetal Thymus	thymus
20	chr6:119854400-119855400	Enhancers	Dnd41	blood
21	chr6:119854400-119855400	Enhancers	Hela-S3	cervix
22	chr6:119854400-119855400	Enhancers	Osteobl	bone
23	chr6:119854400-119856200	Enhancers	HSMM	muscle
24	chr6:119854600-119855400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:119854600-119855400	Flanking Active TSS	GM12878-XiMat	blood
26	chr6:119854600-119855400	Enhancers	NH-A	brain
27	chr6:119854800-119855400	Enhancers	Thymus	Thymus
28	chr6:119855000-119855400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:119855200-119855400	Enhancers	Lung	lung
30	chr6:119855200-119855400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr6:119855200-119855400	Flanking Active TSS	NHDF-Ad	bronchial
32	chr6:119855200-119861200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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