Variant report

Variant	rs12207914
Chromosome Location	chr6:119838052-119838053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119822678..119825294-chr6:119837894..119839723,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10457355	0.96[CEU][hapmap]
rs10485004	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485005	1.00[ASN][1000 genomes]
rs11153832	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962938	0.89[CEU][hapmap]
rs12195793	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12197734	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201876	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203478	1.00[ASN][1000 genomes]
rs12206086	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206472	0.96[CEU][hapmap]
rs12208820	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209160	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194194	1.00[ASN][1000 genomes]
rs13201608	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201736	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208284	1.00[ASN][1000 genomes]
rs13217373	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499571	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628078	1.00[ASN][1000 genomes]
rs17628412	1.00[ASN][1000 genomes]
rs17628430	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628459	1.00[ASN][1000 genomes]
rs17628530	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036257	0.88[CEU][hapmap]
rs2133533	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153824	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418722	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418723	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418738	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418739	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66623281	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899913	1.00[ASN][1000 genomes]
rs6918348	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919823	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923537	1.00[ASN][1000 genomes]
rs6923854	1.00[ASN][1000 genomes]
rs6927955	0.84[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935126	0.96[CEU][hapmap]
rs72954953	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743094	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743821	1.00[ASN][1000 genomes]
rs7754482	0.96[CEU][hapmap]
rs7756933	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7774848	0.84[EUR][1000 genomes]
rs870891	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926859	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv5455	chr6:119794976-119839636	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1018182	chr6:119833609-119866803	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119825800-119850200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:119834200-119838200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:119834200-119842400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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