Variant report

Variant	rs7754482
Chromosome Location	chr6:119653186-119653187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119648699..119654492-chr6:119662714..119668241,6	K562	blood:
2	chr6:119642108..119643824-chr6:119651126..119653679,2	K562	blood:
3	chr6:119652078..119653909-chr6:119655448..119657841,3	K562	blood:
4	chr6:119652694..119656854-chr6:119665170..119671124,7	K562	blood:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1022869	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1022870	0.93[ASN][1000 genomes]
rs1028327	0.86[ASN][1000 genomes]
rs1028328	0.86[ASN][1000 genomes]
rs10456921	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457352	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457353	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457356	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10485001	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10872173	0.86[ASN][1000 genomes]
rs10872177	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11153796	0.93[ASN][1000 genomes]
rs11153797	0.93[ASN][1000 genomes]
rs11153800	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153803	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153805	0.87[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153808	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153810	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153811	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153812	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11751945	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11755967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759899	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11961647	0.93[ASN][1000 genomes]
rs11962938	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12192420	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12198423	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12198667	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12199883	0.81[ASN][1000 genomes]
rs12200554	0.86[ASN][1000 genomes]
rs12205260	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12205826	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12206472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207595	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12210002	0.83[EUR][1000 genomes]
rs12524617	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527248	0.81[ASN][1000 genomes]
rs1295383	0.81[ASN][1000 genomes]
rs1295384	0.81[ASN][1000 genomes]
rs1295388	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1797067	0.81[ASN][1000 genomes]
rs2036257	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2092218	0.86[ASN][1000 genomes]
rs2144236	0.81[ASN][1000 genomes]
rs35305935	0.81[ASN][1000 genomes]
rs4607463	0.86[ASN][1000 genomes]
rs56827721	0.92[ASN][1000 genomes]
rs61094987	0.92[ASN][1000 genomes]
rs6569056	0.86[ASN][1000 genomes]
rs6569057	0.86[ASN][1000 genomes]
rs6569065	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569066	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569072	0.91[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6569073	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569076	0.81[ASN][1000 genomes]
rs6903249	0.93[ASN][1000 genomes]
rs6909928	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6913626	0.93[ASN][1000 genomes]
rs6913654	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6915559	0.87[MEX][hapmap];0.82[TSI][hapmap]
rs6915947	0.87[MEX][hapmap];0.82[TSI][hapmap]
rs6915957	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6918913	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.93[ASN][1000 genomes]
rs6920832	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932241	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932292	0.86[ASN][1000 genomes]
rs6935126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936790	0.81[ASN][1000 genomes]
rs72966433	0.83[AMR][1000 genomes]
rs73529045	1.00[ASN][1000 genomes]
rs73529086	1.00[ASN][1000 genomes]
rs73535209	0.84[ASN][1000 genomes]
rs7740993	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7741003	0.82[TSI][hapmap]
rs7743824	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7745295	0.81[ASN][1000 genomes]
rs7745633	0.81[ASN][1000 genomes]
rs7750041	0.93[ASN][1000 genomes]
rs7750901	1.00[JPT][hapmap]
rs7750941	1.00[JPT][hapmap]
rs7753315	0.87[MEX][hapmap];0.82[TSI][hapmap]
rs7753492	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7760582	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7763569	0.86[ASN][1000 genomes]
rs7767198	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7770398	1.00[JPT][hapmap]
rs7770777	0.93[ASN][1000 genomes]
rs926859	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9374795	0.81[ASN][1000 genomes]
rs9481900	1.00[JPT][hapmap]
rs9489669	1.00[JPT][hapmap]
rs9489686	0.87[TSI][hapmap];0.81[AMR][1000 genomes]
rs9489697	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv1802628	chr6:119647135-119678881	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119625200-119668600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:119627800-119667000	Weak transcription	Gastric	stomach
3	chr6:119636000-119661600	Weak transcription	Colonic Mucosa	Colon
4	chr6:119636200-119661600	Weak transcription	NHDF-Ad	bronchial
5	chr6:119636200-119662000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:119636200-119667400	Weak transcription	Right Ventricle	heart
7	chr6:119636200-119667800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:119636400-119656000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:119636600-119655800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:119637200-119656600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:119639800-119655800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:119641400-119668200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:119642800-119656000	Weak transcription	Ovary	ovary
14	chr6:119644200-119667000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:119644600-119661800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:119644800-119661400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:119645000-119659600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:119645000-119668200	Weak transcription	Aorta	Aorta
19	chr6:119645200-119661800	Weak transcription	Fetal Kidney	kidney
20	chr6:119646600-119654600	Genic enhancers	K562	blood
21	chr6:119646800-119654800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:119647600-119662200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:119647600-119664400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:119647800-119655800	Weak transcription	Fetal Lung	lung
25	chr6:119647800-119655800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:119647800-119661400	Weak transcription	Spleen	Spleen
27	chr6:119648200-119657000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:119648200-119661400	Weak transcription	Lung	lung
29	chr6:119648200-119668000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:119648200-119668000	Weak transcription	Esophagus	oesophagus
31	chr6:119648600-119661000	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:119649600-119659800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:119650600-119655800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:119651000-119656000	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:119651000-119661600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:119651000-119662400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:119651000-119667400	Weak transcription	Fetal Stomach	stomach
38	chr6:119651200-119662400	Weak transcription	Placenta	Placenta
39	chr6:119651400-119653200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:119651400-119653200	Genic enhancers	Liver	Liver
41	chr6:119651400-119661200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:119651600-119653200	Enhancers	Fetal Thymus	thymus
43	chr6:119651800-119653200	Strong transcription	Duodenum Mucosa	Duodenum
44	chr6:119651800-119653800	Strong transcription	Fetal Intestine Small	intestine
45	chr6:119651800-119661600	Weak transcription	Fetal Intestine Large	intestine
46	chr6:119652000-119654800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr6:119652200-119653400	Enhancers	Primary hematopoietic stem cells	blood
48	chr6:119652200-119654200	Strong transcription	HepG2	liver
49	chr6:119652200-119654400	Weak transcription	Adipose Nuclei	Adipose
50	chr6:119652200-119656000	Weak transcription	Brain Anterior Caudate	brain

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