Variant report

Variant	rs7770777
Chromosome Location	chr6:119552205-119552206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119549395..119552818-chr6:119562345..119566202,3	K562	blood:
2	chr6:119540977..119543297-chr6:119549522..119552338,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1022869	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022870	1.00[ASN][1000 genomes]
rs1028327	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1028328	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10456921	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457352	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457353	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457355	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10485001	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872173	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10872177	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153796	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153797	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153803	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153805	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153808	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153810	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153811	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153812	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11759899	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961647	1.00[ASN][1000 genomes]
rs11962938	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192420	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198423	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198667	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200554	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12205260	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206472	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12207595	0.83[EUR][1000 genomes]
rs12210002	0.90[EUR][1000 genomes]
rs12524617	0.93[ASN][1000 genomes]
rs1295388	0.93[ASN][1000 genomes]
rs17514051	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2038769	0.82[CEU][hapmap]
rs2092218	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299876	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35433313	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4607463	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55778105	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61094987	0.85[ASN][1000 genomes]
rs6569056	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569057	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569065	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569066	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569072	0.88[CEU][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6569073	1.00[ASN][1000 genomes]
rs6903249	1.00[ASN][1000 genomes]
rs6909928	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913626	1.00[ASN][1000 genomes]
rs6913654	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915957	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918913	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6920832	0.93[ASN][1000 genomes]
rs6932241	0.93[ASN][1000 genomes]
rs6932292	0.93[ASN][1000 genomes]
rs6935126	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs72960631	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73529045	0.93[ASN][1000 genomes]
rs73529086	0.93[ASN][1000 genomes]
rs7740993	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7743299	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7743824	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750041	1.00[ASN][1000 genomes]
rs7750901	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7750941	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7753492	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754289	0.80[AFR][1000 genomes]
rs7754482	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7756391	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7760582	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763569	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767198	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770398	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs926859	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481900	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs9489669	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv522725	chr6:119549468-119565043	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119519200-119558400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:119524800-119558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:119525400-119556000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:119525400-119558400	Weak transcription	Small Intestine	intestine
5	chr6:119525800-119554200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:119525800-119555800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:119526000-119555200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:119526000-119558400	Weak transcription	Placenta	Placenta
9	chr6:119526200-119558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:119531600-119558400	Weak transcription	NHLF	lung
11	chr6:119537400-119554000	Weak transcription	Fetal Intestine Large	intestine
12	chr6:119537400-119554000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:119537400-119556800	Weak transcription	Fetal Stomach	stomach
14	chr6:119537600-119558400	Weak transcription	Right Atrium	heart
15	chr6:119537800-119555600	Weak transcription	Left Ventricle	heart
16	chr6:119537800-119558400	Weak transcription	Ovary	ovary
17	chr6:119540000-119554800	Weak transcription	Gastric	stomach
18	chr6:119541000-119558400	Weak transcription	NHEK	skin
19	chr6:119545400-119556000	Weak transcription	Fetal Thymus	thymus
20	chr6:119545600-119556000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:119545600-119558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:119546000-119556000	Weak transcription	Fetal Lung	lung
23	chr6:119547000-119553200	Strong transcription	HepG2	liver
24	chr6:119547200-119556200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:119547200-119558400	Weak transcription	Spleen	Spleen
26	chr6:119547400-119554400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:119547400-119583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:119547600-119556000	Weak transcription	NHDF-Ad	bronchial
29	chr6:119547600-119558400	Weak transcription	Esophagus	oesophagus
30	chr6:119547600-119558400	Weak transcription	Pancreas	Pancrea
31	chr6:119547600-119558400	Weak transcription	Thymus	Thymus
32	chr6:119548800-119558400	Weak transcription	Primary T cells from cord blood	blood
33	chr6:119549000-119555600	Weak transcription	Aorta	Aorta
34	chr6:119549200-119556000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:119549800-119558400	Weak transcription	Lung	lung
36	chr6:119550000-119558400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:119550000-119561600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:119550600-119552400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:119550600-119553400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:119550800-119553000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:119550800-119553200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:119550800-119558400	Weak transcription	Right Ventricle	heart
43	chr6:119551000-119553000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:119551200-119552400	Strong transcription	Primary B cells from cord blood	blood
45	chr6:119551200-119552800	Strong transcription	Primary hematopoietic stem cells	blood
46	chr6:119551200-119554600	Strong transcription	Liver	Liver
47	chr6:119551200-119556600	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:119551200-119558400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:119551400-119556000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:119551400-119558400	Weak transcription	Dnd41	blood

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