Variant report

Variant	rs73529086
Chromosome Location	chr6:119749545-119749546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119748860..119751626-chr6:119758382..119761495,3	MCF-7	breast:
2	chr6:119749502..119751634-chr6:119753992..119756168,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1022869	0.93[ASN][1000 genomes]
rs1022870	0.93[ASN][1000 genomes]
rs10456921	0.93[ASN][1000 genomes]
rs10457352	0.93[ASN][1000 genomes]
rs10457353	0.93[ASN][1000 genomes]
rs10457355	1.00[ASN][1000 genomes]
rs10485001	0.93[ASN][1000 genomes]
rs10872177	0.86[ASN][1000 genomes]
rs11153800	0.93[ASN][1000 genomes]
rs11153803	0.93[ASN][1000 genomes]
rs11153805	0.93[ASN][1000 genomes]
rs11153808	0.93[ASN][1000 genomes]
rs11153810	0.93[ASN][1000 genomes]
rs11153811	0.93[ASN][1000 genomes]
rs11153812	0.93[ASN][1000 genomes]
rs11751945	0.93[ASN][1000 genomes]
rs11755967	1.00[ASN][1000 genomes]
rs11759899	0.93[ASN][1000 genomes]
rs11961647	0.93[ASN][1000 genomes]
rs11962938	0.93[ASN][1000 genomes]
rs12192420	0.93[ASN][1000 genomes]
rs12198423	0.93[ASN][1000 genomes]
rs12198667	0.93[ASN][1000 genomes]
rs12199883	0.81[ASN][1000 genomes]
rs12200554	0.86[ASN][1000 genomes]
rs12205260	0.93[ASN][1000 genomes]
rs12205826	0.93[ASN][1000 genomes]
rs12206472	1.00[ASN][1000 genomes]
rs12524617	1.00[ASN][1000 genomes]
rs12527248	0.81[ASN][1000 genomes]
rs1295383	0.81[ASN][1000 genomes]
rs1295384	0.81[ASN][1000 genomes]
rs1295388	1.00[ASN][1000 genomes]
rs1797067	0.81[ASN][1000 genomes]
rs2036257	0.81[ASN][1000 genomes]
rs2092218	0.86[ASN][1000 genomes]
rs2144236	0.81[ASN][1000 genomes]
rs35305935	0.81[ASN][1000 genomes]
rs56827721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61094987	0.92[ASN][1000 genomes]
rs6569057	0.86[ASN][1000 genomes]
rs6569065	0.93[ASN][1000 genomes]
rs6569066	0.93[ASN][1000 genomes]
rs6569072	0.86[ASN][1000 genomes]
rs6569073	0.93[ASN][1000 genomes]
rs6569076	0.81[ASN][1000 genomes]
rs6903249	0.93[ASN][1000 genomes]
rs6909928	0.93[ASN][1000 genomes]
rs6913626	0.93[ASN][1000 genomes]
rs6913654	0.93[ASN][1000 genomes]
rs6915957	0.93[ASN][1000 genomes]
rs6918913	0.93[ASN][1000 genomes]
rs6920832	1.00[ASN][1000 genomes]
rs6932241	1.00[ASN][1000 genomes]
rs6935126	1.00[ASN][1000 genomes]
rs6936790	0.81[ASN][1000 genomes]
rs73529045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73529050	1.00[AMR][1000 genomes]
rs73531009	1.00[AMR][1000 genomes]
rs73535209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73535254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7740993	0.86[ASN][1000 genomes]
rs7743824	0.93[ASN][1000 genomes]
rs7745295	0.81[ASN][1000 genomes]
rs7745633	0.81[ASN][1000 genomes]
rs7750041	0.93[ASN][1000 genomes]
rs7753492	0.93[ASN][1000 genomes]
rs7754482	1.00[ASN][1000 genomes]
rs7760582	0.93[ASN][1000 genomes]
rs7767198	0.93[ASN][1000 genomes]
rs7770777	0.93[ASN][1000 genomes]
rs926859	0.93[ASN][1000 genomes]
rs9374795	0.81[ASN][1000 genomes]
rs9489697	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv1845804	chr6:119747112-119771715	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119748000-119750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:119748200-119749800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:119748200-119750000	Weak transcription	HSMMtube	muscle
4	chr6:119748200-119767000	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:119748400-119749800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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