Variant report

Variant	rs73531009
Chromosome Location	chr6:119768174-119768175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119767735..119770196-chr6:119787942..119790551,2	K562	blood:
2	chr6:119670894..119673375-chr6:119766065..119768407,2	MCF-7	breast:
3	chr6:119767598..119768505-chr6:120003836..120004762,2	MCF-7	breast:
4	chr6:119668933..119671927-chr6:119765997..119768389,3	MCF-7	breast:
5	chr6:119767617..119768590-chr6:120004189..120004690,2	MCF-7	breast:
6	chr6:119767806..119768327-chr6:120289096..120289698,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56827721	1.00[AMR][1000 genomes]
rs73529050	1.00[AMR][1000 genomes]
rs73529086	1.00[AMR][1000 genomes]
rs73535209	1.00[AMR][1000 genomes]
rs73535254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv1845804	chr6:119747112-119771715	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119760600-119774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119763400-119768200	Enhancers	Dnd41	blood
3	chr6:119763400-119768400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:119763400-119772200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:119763600-119768400	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:119763600-119772200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:119765000-119768600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:119765200-119768200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:119765200-119768200	Enhancers	K562	blood
10	chr6:119765400-119768200	Enhancers	NH-A	brain
11	chr6:119765400-119768600	Enhancers	Osteobl	bone
12	chr6:119765800-119768200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:119765800-119768200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:119766000-119768600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:119766000-119769000	Enhancers	Stomach Mucosa	stomach
16	chr6:119766000-119770000	Weak transcription	Primary B cells from cord blood	blood
17	chr6:119766000-119770200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:119766400-119768200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:119766400-119768400	Enhancers	Brain Hippocampus Middle	brain
20	chr6:119766400-119768400	Enhancers	Small Intestine	intestine
21	chr6:119766600-119768400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:119766600-119768800	Enhancers	Brain Anterior Caudate	brain
23	chr6:119766600-119768800	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:119766800-119768200	Enhancers	NHDF-Ad	bronchial
25	chr6:119766800-119768400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:119766800-119768400	Enhancers	Placenta	Placenta
27	chr6:119766800-119768400	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr6:119766800-119768400	Enhancers	HSMMtube	muscle
29	chr6:119766800-119768800	Enhancers	Fetal Lung	lung
30	chr6:119767000-119768200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:119767000-119768200	Enhancers	Aorta	Aorta
32	chr6:119767000-119768200	Enhancers	Brain Angular Gyrus	brain
33	chr6:119767000-119768200	Enhancers	Brain Cingulate Gyrus	brain
34	chr6:119767000-119768200	Enhancers	Pancreas	Pancrea
35	chr6:119767000-119768200	Enhancers	Right Atrium	heart
36	chr6:119767000-119768200	Enhancers	HSMM	muscle
37	chr6:119767000-119768200	Enhancers	NHEK	skin
38	chr6:119767000-119768400	Enhancers	Colon Smooth Muscle	Colon
39	chr6:119767000-119768400	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr6:119767000-119768400	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr6:119767000-119768600	Enhancers	Brain Substantia Nigra	brain
42	chr6:119767000-119768600	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr6:119767000-119768600	Enhancers	NHLF	lung
44	chr6:119767200-119768200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr6:119767200-119768200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr6:119767200-119768400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:119767200-119768400	Enhancers	Rectal Smooth Muscle	rectum
48	chr6:119767200-119768800	Enhancers	Gastric	stomach
49	chr6:119767200-119770000	Weak transcription	Fetal Thymus	thymus
50	chr6:119767400-119768200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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