Variant report

Variant	rs56827721
Chromosome Location	chr6:119788691-119788692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119784381..119786742-chr6:119787652..119789460,2	K562	blood:
2	chr6:119767735..119770196-chr6:119787942..119790551,2	K562	blood:
3	chr6:119787516..119789829-chr6:119805762..119807377,2	MCF-7	breast:
4	chr6:119774448..119776826-chr6:119788102..119790606,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1022869	0.85[ASN][1000 genomes]
rs1022870	0.85[ASN][1000 genomes]
rs10456921	0.85[ASN][1000 genomes]
rs10457352	0.85[ASN][1000 genomes]
rs10457353	0.85[ASN][1000 genomes]
rs10457355	0.92[ASN][1000 genomes]
rs10485001	0.85[ASN][1000 genomes]
rs11153803	0.85[ASN][1000 genomes]
rs11153805	0.85[ASN][1000 genomes]
rs11153808	0.85[ASN][1000 genomes]
rs11153810	0.85[ASN][1000 genomes]
rs11153811	0.85[ASN][1000 genomes]
rs11153812	0.85[ASN][1000 genomes]
rs11755967	0.92[ASN][1000 genomes]
rs11759899	0.85[ASN][1000 genomes]
rs11961647	0.85[ASN][1000 genomes]
rs11962938	0.85[ASN][1000 genomes]
rs12205260	0.85[ASN][1000 genomes]
rs12206472	0.92[ASN][1000 genomes]
rs12524617	0.92[ASN][1000 genomes]
rs1295388	0.92[ASN][1000 genomes]
rs61094987	0.84[ASN][1000 genomes]
rs6569065	0.85[ASN][1000 genomes]
rs6569066	0.85[ASN][1000 genomes]
rs6569073	0.85[ASN][1000 genomes]
rs6903249	0.85[ASN][1000 genomes]
rs6909928	0.85[ASN][1000 genomes]
rs6913626	0.85[ASN][1000 genomes]
rs6913654	0.85[ASN][1000 genomes]
rs6918913	0.85[ASN][1000 genomes]
rs6920832	0.92[ASN][1000 genomes]
rs6932241	0.92[ASN][1000 genomes]
rs6935126	0.92[ASN][1000 genomes]
rs73529045	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73529050	1.00[AMR][1000 genomes]
rs73529086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73531009	1.00[AMR][1000 genomes]
rs73535209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73535254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743824	0.85[ASN][1000 genomes]
rs7750041	0.85[ASN][1000 genomes]
rs7754482	0.92[ASN][1000 genomes]
rs7760582	0.85[ASN][1000 genomes]
rs7767198	0.85[ASN][1000 genomes]
rs926859	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119776200-119789200	Weak transcription	Fetal Heart	heart
2	chr6:119788400-119788800	Active TSS	Adipose Nuclei	Adipose
3	chr6:119788400-119788800	Enhancers	Ovary	ovary
4	chr6:119788400-119788800	Enhancers	NHDF-Ad	bronchial
5	chr6:119788400-119789000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:119788400-119789200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:119788400-119789200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:119788600-119788800	Enhancers	Dnd41	blood
9	chr6:119788600-119789000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:119788600-119789000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:119788600-119789000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:119788600-119789200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:119788600-119789200	Active TSS	Primary hematopoietic stem cells	blood
14	chr6:119788600-119789200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:119788600-119789200	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr6:119788600-119789200	Active TSS	Right Atrium	heart
17	chr6:119788600-119789400	Active TSS	Stomach Smooth Muscle	stomach
18	chr6:119788600-119789400	Weak transcription	K562	blood

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