Variant report

Variant	rs61094987
Chromosome Location	chr6:119717616-119717617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1022869	0.85[ASN][1000 genomes]
rs1022870	0.85[ASN][1000 genomes]
rs10456921	0.85[ASN][1000 genomes]
rs10457352	0.85[ASN][1000 genomes]
rs10457353	0.85[ASN][1000 genomes]
rs10457355	0.92[ASN][1000 genomes]
rs10485001	0.85[ASN][1000 genomes]
rs11153796	0.85[ASN][1000 genomes]
rs11153797	0.85[ASN][1000 genomes]
rs11153800	0.85[ASN][1000 genomes]
rs11153803	0.85[ASN][1000 genomes]
rs11153805	0.85[ASN][1000 genomes]
rs11153808	0.85[ASN][1000 genomes]
rs11153810	0.85[ASN][1000 genomes]
rs11153811	0.85[ASN][1000 genomes]
rs11153812	0.85[ASN][1000 genomes]
rs11751945	0.85[ASN][1000 genomes]
rs11755967	0.92[ASN][1000 genomes]
rs11759899	0.85[ASN][1000 genomes]
rs11961647	0.85[ASN][1000 genomes]
rs11962938	0.85[ASN][1000 genomes]
rs12192420	0.85[ASN][1000 genomes]
rs12198423	0.85[ASN][1000 genomes]
rs12198667	0.85[ASN][1000 genomes]
rs12205260	0.85[ASN][1000 genomes]
rs12205826	0.85[ASN][1000 genomes]
rs12206472	0.92[ASN][1000 genomes]
rs12524617	0.92[ASN][1000 genomes]
rs1295388	0.92[ASN][1000 genomes]
rs56827721	0.84[ASN][1000 genomes]
rs6569065	0.85[ASN][1000 genomes]
rs6569066	0.85[ASN][1000 genomes]
rs6569073	0.85[ASN][1000 genomes]
rs6903249	0.85[ASN][1000 genomes]
rs6909928	0.85[ASN][1000 genomes]
rs6913626	0.85[ASN][1000 genomes]
rs6913654	0.85[ASN][1000 genomes]
rs6915957	0.85[ASN][1000 genomes]
rs6918913	0.85[ASN][1000 genomes]
rs6920832	0.92[ASN][1000 genomes]
rs6932241	0.92[ASN][1000 genomes]
rs6935126	0.92[ASN][1000 genomes]
rs73529045	0.92[ASN][1000 genomes]
rs73529086	0.92[ASN][1000 genomes]
rs7743824	0.85[ASN][1000 genomes]
rs7750041	0.85[ASN][1000 genomes]
rs7753492	0.85[ASN][1000 genomes]
rs7754482	0.92[ASN][1000 genomes]
rs7760582	0.85[ASN][1000 genomes]
rs7767198	0.85[ASN][1000 genomes]
rs7770777	0.85[ASN][1000 genomes]
rs926859	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119689600-119720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:119712000-119717800	Weak transcription	Pancreas	Pancrea

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