Variant report

Variant	rs11153797
Chromosome Location	chr6:119546430-119546431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119544839..119546682-chr6:119574098..119575627,2	K562	blood:
2	chr6:119539721..119541737-chr6:119545177..119547748,2	K562	blood:
3	chr6:119545894..119548762-chr6:119549327..119552049,2	K562	blood:
4	chr6:119544747..119546851-chr6:119549887..119551425,2	MCF-7	breast:
5	chr6:119531878..119534156-chr6:119544233..119546435,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1022869	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022870	1.00[ASN][1000 genomes]
rs1028327	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1028328	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10456921	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457352	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457353	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10457355	0.93[ASN][1000 genomes]
rs10485001	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872173	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10872177	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153796	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153800	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153803	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153805	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153808	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153810	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153811	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153812	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751945	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755967	0.93[ASN][1000 genomes]
rs11759899	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11961647	1.00[ASN][1000 genomes]
rs11962938	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12192420	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198423	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12198667	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200554	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12205260	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205826	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206472	0.93[ASN][1000 genomes]
rs12207595	0.82[EUR][1000 genomes]
rs12210002	0.88[EUR][1000 genomes]
rs12524617	0.93[ASN][1000 genomes]
rs1295388	0.93[ASN][1000 genomes]
rs17514051	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2092218	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299876	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35433313	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4607463	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55778105	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61094987	0.85[ASN][1000 genomes]
rs6569056	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569057	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569065	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569066	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569072	0.93[ASN][1000 genomes]
rs6569073	1.00[ASN][1000 genomes]
rs6903249	1.00[ASN][1000 genomes]
rs6909928	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913626	1.00[ASN][1000 genomes]
rs6913654	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915957	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918913	1.00[ASN][1000 genomes]
rs6920832	0.93[ASN][1000 genomes]
rs6932241	0.93[ASN][1000 genomes]
rs6932292	0.93[ASN][1000 genomes]
rs6935126	0.93[ASN][1000 genomes]
rs72960631	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73529045	0.93[ASN][1000 genomes]
rs7740993	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7743299	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7743824	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750041	1.00[ASN][1000 genomes]
rs7753492	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754289	0.83[AFR][1000 genomes]
rs7754482	0.93[ASN][1000 genomes]
rs7756391	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7760582	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763569	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767198	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770777	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926859	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
2	chr6:119519200-119558400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:119524800-119558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:119525400-119548600	Weak transcription	Aorta	Aorta
5	chr6:119525400-119556000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:119525400-119558400	Weak transcription	Small Intestine	intestine
7	chr6:119525800-119554200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:119525800-119555800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:119526000-119555200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:119526000-119558400	Weak transcription	Placenta	Placenta
11	chr6:119526200-119558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:119528600-119551200	Weak transcription	Primary B cells from cord blood	blood
13	chr6:119531200-119552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:119531600-119558400	Weak transcription	NHLF	lung
15	chr6:119537400-119547400	Weak transcription	Pancreas	Pancrea
16	chr6:119537400-119550800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:119537400-119554000	Weak transcription	Fetal Intestine Large	intestine
18	chr6:119537400-119554000	Weak transcription	Fetal Intestine Small	intestine
19	chr6:119537400-119556800	Weak transcription	Fetal Stomach	stomach
20	chr6:119537600-119558400	Weak transcription	Right Atrium	heart
21	chr6:119537800-119548400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:119537800-119555600	Weak transcription	Left Ventricle	heart
23	chr6:119537800-119558400	Weak transcription	Ovary	ovary
24	chr6:119538400-119548400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:119540000-119554800	Weak transcription	Gastric	stomach
26	chr6:119540400-119547200	Weak transcription	K562	blood
27	chr6:119541000-119558400	Weak transcription	NHEK	skin
28	chr6:119542000-119548200	Weak transcription	Liver	Liver
29	chr6:119542600-119547000	Weak transcription	HepG2	liver
30	chr6:119545000-119548800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr6:119545400-119556000	Weak transcription	Fetal Thymus	thymus
32	chr6:119545600-119551000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:119545600-119556000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:119545600-119558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:119545800-119551400	Weak transcription	Adipose Nuclei	Adipose
36	chr6:119546000-119556000	Weak transcription	Fetal Lung	lung
37	chr6:119546400-119546600	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr6:119546400-119547000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr6:119546400-119549000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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