Variant report

Variant	rs6569072
Chromosome Location	chr6:119633014-119633015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119630356..119635588-chr6:119947996..119951157,4	K562	blood:
2	chr6:119632816..119634470-chr6:119655470..119658092,2	K562	blood:
3	chr6:119255724..119257359-chr6:119631437..119633020,2	K562	blood:
4	chr6:119631576..119635032-chr6:119667472..119671213,7	K562	blood:
5	chr6:119616681..119618587-chr6:119631653..119633211,2	K562	blood:
6	chr6:119559906..119562568-chr6:119632947..119635233,2	K562	blood:
7	chr6:119214822..119217448-chr6:119632711..119634437,2	K562	blood:
8	chr6:119632711..119634346-chr6:119660199..119662314,2	K562	blood:
9	chr6:119628759..119633610-chr6:119634034..119636665,6	MCF-7	breast:
10	chr6:119215172..119217448-chr6:119632930..119634437,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000111875	Chromatin interaction
ENSG00000111877	Chromatin interaction
ENSG00000111885	Chromatin interaction
ENSG00000253194	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1022869	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1022870	0.93[ASN][1000 genomes]
rs1028327	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028328	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456921	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457352	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457353	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10457355	0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10485001	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10872173	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872177	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11153796	0.93[ASN][1000 genomes]
rs11153797	0.93[ASN][1000 genomes]
rs11153800	0.88[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153803	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153805	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153808	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153810	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153811	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153812	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11751945	0.88[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11755967	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11759899	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11961647	0.93[ASN][1000 genomes]
rs11962938	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12192420	0.93[ASN][1000 genomes]
rs12198423	0.93[ASN][1000 genomes]
rs12198667	0.93[ASN][1000 genomes]
rs12199883	0.81[ASN][1000 genomes]
rs12200554	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205260	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12205826	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12206472	0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12207595	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12524617	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12527248	0.81[ASN][1000 genomes]
rs1295383	0.81[ASN][1000 genomes]
rs1295384	0.81[ASN][1000 genomes]
rs1295388	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1797067	0.81[ASN][1000 genomes]
rs2036257	0.85[CEU][hapmap];0.81[ASN][1000 genomes]
rs2092218	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144236	0.81[ASN][1000 genomes]
rs35305935	0.81[ASN][1000 genomes]
rs35433313	0.86[EUR][1000 genomes]
rs4607463	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569056	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569057	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569065	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569066	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569073	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6569076	0.81[ASN][1000 genomes]
rs6903249	0.93[ASN][1000 genomes]
rs6909928	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6913626	0.93[ASN][1000 genomes]
rs6913654	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6915957	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6918913	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6920832	0.86[ASN][1000 genomes]
rs6932241	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6932292	1.00[ASN][1000 genomes]
rs6935126	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6936790	0.81[ASN][1000 genomes]
rs73529045	0.86[ASN][1000 genomes]
rs73529086	0.86[ASN][1000 genomes]
rs7740993	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7743824	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7745295	0.81[ASN][1000 genomes]
rs7745633	0.81[ASN][1000 genomes]
rs7750041	0.93[ASN][1000 genomes]
rs7750901	1.00[JPT][hapmap]
rs7750941	1.00[JPT][hapmap]
rs7753492	0.93[ASN][1000 genomes]
rs7754482	0.91[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7756391	0.87[ASN][1000 genomes]
rs7760582	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7763569	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767198	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7770398	1.00[JPT][hapmap]
rs7770777	0.93[ASN][1000 genomes]
rs926859	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9374795	0.81[ASN][1000 genomes]
rs9481900	1.00[JPT][hapmap]
rs9489669	1.00[JPT][hapmap]
rs9489697	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv1794477	chr6:119609322-119633534	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119592400-119633600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:119602600-119635600	Weak transcription	Esophagus	oesophagus
3	chr6:119617200-119637400	Weak transcription	Aorta	Aorta
4	chr6:119618200-119633800	Weak transcription	Colonic Mucosa	Colon
5	chr6:119621600-119633600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:119621600-119634000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:119623400-119633600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:119625200-119634200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:119625200-119634200	Weak transcription	Brain Angular Gyrus	brain
10	chr6:119625200-119634400	Weak transcription	Fetal Stomach	stomach
11	chr6:119625200-119634400	Weak transcription	Thymus	Thymus
12	chr6:119625200-119635600	Weak transcription	Psoas Muscle	Psoas
13	chr6:119625200-119668600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:119627200-119636800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:119627800-119635600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:119627800-119667000	Weak transcription	Gastric	stomach
17	chr6:119628000-119633600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:119628000-119633800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:119628000-119633800	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:119628000-119633800	Weak transcription	Lung	lung
21	chr6:119628000-119634000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:119628000-119634400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:119628000-119635800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:119628200-119633200	Weak transcription	Fetal Thymus	thymus
25	chr6:119628200-119633800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:119628200-119633800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:119629200-119637000	Enhancers	Adipose Nuclei	Adipose
28	chr6:119629400-119633200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:119630200-119634800	Enhancers	Small Intestine	intestine
30	chr6:119630400-119634000	Weak transcription	Fetal Lung	lung
31	chr6:119630400-119634800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:119630400-119635200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:119630400-119635200	Weak transcription	Osteobl	bone
34	chr6:119630400-119637800	Genic enhancers	HepG2	liver
35	chr6:119630600-119633600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:119630600-119633800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:119630600-119634000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:119630800-119633600	Weak transcription	Fetal Intestine Small	intestine
39	chr6:119630800-119633800	Weak transcription	Dnd41	blood
40	chr6:119630800-119635400	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:119630800-119636600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr6:119631000-119633600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:119631000-119633600	Weak transcription	Fetal Intestine Large	intestine
44	chr6:119631200-119633600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:119631400-119633800	Genic enhancers	Primary hematopoietic stem cells	blood
46	chr6:119631600-119633200	Enhancers	Placenta	Placenta
47	chr6:119631600-119633400	Transcr. at gene 5' and 3'	K562	blood
48	chr6:119631600-119634600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:119631600-119634600	Enhancers	Pancreas	Pancrea
50	chr6:119631600-119636400	Enhancers	Left Ventricle	heart

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