Variant report

Variant	rs2092218
Chromosome Location	chr6:119557295-119557296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:31149433..31151344-chr6:119557133..119558665,2	K562	blood:
2	chr2:133033539..133035957-chr6:119557078..119558606,2	K562	blood:
3	chr17:31149419..31151377-chr6:119557104..119560086,5	MCF-7	breast:
4	chr2:133034522..133037379-chr6:119557092..119560188,5	MCF-7	breast:
5	chr17:31149607..31151366-chr6:119557105..119558640,4	MCF-7	breast:
6	chr2:133034372..133035957-chr6:119557078..119558627,2	K562	blood:
7	chr21:9824262..9827048-chr6:119557117..119558628,2	MCF-7	breast:
8	chr22:25281279..25282799-chr6:119557135..119558635,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000264063	Chromatin interaction
ENSG00000264462	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1022869	0.93[ASN][1000 genomes]
rs1022870	0.93[ASN][1000 genomes]
rs1028327	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1028328	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456921	0.93[ASN][1000 genomes]
rs10457352	0.93[ASN][1000 genomes]
rs10457353	0.93[ASN][1000 genomes]
rs10457355	0.86[ASN][1000 genomes]
rs10485001	0.93[ASN][1000 genomes]
rs10872173	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10872177	0.87[ASN][1000 genomes]
rs11153796	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153797	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11153800	0.93[ASN][1000 genomes]
rs11153803	0.93[ASN][1000 genomes]
rs11153805	0.93[ASN][1000 genomes]
rs11153808	0.93[ASN][1000 genomes]
rs11153810	0.93[ASN][1000 genomes]
rs11153811	0.93[ASN][1000 genomes]
rs11153812	0.93[ASN][1000 genomes]
rs11751945	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11755967	0.86[ASN][1000 genomes]
rs11759899	0.93[ASN][1000 genomes]
rs11961647	0.93[ASN][1000 genomes]
rs11962938	0.93[ASN][1000 genomes]
rs12192420	0.93[ASN][1000 genomes]
rs12198423	0.93[ASN][1000 genomes]
rs12198667	0.93[ASN][1000 genomes]
rs12199883	0.81[ASN][1000 genomes]
rs12200554	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205260	0.93[ASN][1000 genomes]
rs12205826	0.93[ASN][1000 genomes]
rs12206472	0.86[ASN][1000 genomes]
rs12524617	0.86[ASN][1000 genomes]
rs12527248	0.81[ASN][1000 genomes]
rs1295383	0.81[ASN][1000 genomes]
rs1295384	0.81[ASN][1000 genomes]
rs1295388	0.86[ASN][1000 genomes]
rs17514051	0.82[EUR][1000 genomes]
rs1797067	0.81[ASN][1000 genomes]
rs2144236	0.81[ASN][1000 genomes]
rs35433313	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4607463	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569056	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569057	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569065	0.93[ASN][1000 genomes]
rs6569066	0.93[ASN][1000 genomes]
rs6569072	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569073	0.93[ASN][1000 genomes]
rs6569076	0.81[ASN][1000 genomes]
rs6903249	0.93[ASN][1000 genomes]
rs6909928	0.93[ASN][1000 genomes]
rs6913626	0.93[ASN][1000 genomes]
rs6913654	0.93[ASN][1000 genomes]
rs6915957	0.93[ASN][1000 genomes]
rs6918913	0.93[ASN][1000 genomes]
rs6920832	0.86[ASN][1000 genomes]
rs6932241	0.86[ASN][1000 genomes]
rs6932292	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935126	0.86[ASN][1000 genomes]
rs6936790	0.81[ASN][1000 genomes]
rs72960631	0.83[EUR][1000 genomes]
rs73529045	0.86[ASN][1000 genomes]
rs73529086	0.86[ASN][1000 genomes]
rs7740993	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7743299	0.82[EUR][1000 genomes]
rs7743824	0.93[ASN][1000 genomes]
rs7745295	0.81[ASN][1000 genomes]
rs7745633	0.81[ASN][1000 genomes]
rs7750041	0.93[ASN][1000 genomes]
rs7753492	0.93[ASN][1000 genomes]
rs7754482	0.86[ASN][1000 genomes]
rs7756391	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7760582	0.93[ASN][1000 genomes]
rs7763569	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767198	0.93[ASN][1000 genomes]
rs7770777	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs926859	0.93[ASN][1000 genomes]
rs9374795	0.81[ASN][1000 genomes]
rs9489697	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv522725	chr6:119549468-119565043	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv969440	chr6:119554594-119559045	Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119519200-119558400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:119524800-119558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:119525400-119558400	Weak transcription	Small Intestine	intestine
4	chr6:119526000-119558400	Weak transcription	Placenta	Placenta
5	chr6:119526200-119558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:119531600-119558400	Weak transcription	NHLF	lung
7	chr6:119537600-119558400	Weak transcription	Right Atrium	heart
8	chr6:119537800-119558400	Weak transcription	Ovary	ovary
9	chr6:119541000-119558400	Weak transcription	NHEK	skin
10	chr6:119545600-119558400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:119547200-119558400	Weak transcription	Spleen	Spleen
12	chr6:119547400-119583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:119547600-119558400	Weak transcription	Esophagus	oesophagus
14	chr6:119547600-119558400	Weak transcription	Pancreas	Pancrea
15	chr6:119547600-119558400	Weak transcription	Thymus	Thymus
16	chr6:119548800-119558400	Weak transcription	Primary T cells from cord blood	blood
17	chr6:119549800-119558400	Weak transcription	Lung	lung
18	chr6:119550000-119558400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:119550000-119561600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:119550800-119558400	Weak transcription	Right Ventricle	heart
21	chr6:119551200-119558400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:119551400-119558400	Weak transcription	Dnd41	blood
23	chr6:119552200-119558400	Weak transcription	HUVEC	blood vessel
24	chr6:119552400-119558400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:119553000-119558400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:119554400-119558400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:119554400-119558400	Weak transcription	Fetal Kidney	kidney
28	chr6:119554600-119558400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:119554800-119558400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:119554800-119558400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:119555000-119558400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:119555000-119558400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:119555000-119558400	Weak transcription	Brain Anterior Caudate	brain
34	chr6:119555000-119558400	Weak transcription	Gastric	stomach
35	chr6:119555000-119558400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:119555200-119558400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:119555200-119558400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:119555400-119558400	Weak transcription	GM12878-XiMat	blood
39	chr6:119555600-119558400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:119555600-119558400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:119555800-119557600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:119555800-119558400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:119555800-119558400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:119556000-119557400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:119556000-119557600	ZNF genes & repeats	Fetal Lung	lung
46	chr6:119556200-119558800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
47	chr6:119556400-119557600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr6:119556400-119558400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr6:119556400-119558400	Weak transcription	Fetal Heart	heart
50	chr6:119556400-119558400	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links