Variant report

Variant	rs35305935
Chromosome Location	chr6:119766608-119766609
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119670894..119673375-chr6:119766065..119768407,2	MCF-7	breast:
2	chr6:119668933..119671927-chr6:119765997..119768389,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10457355	0.81[ASN][1000 genomes]
rs11755967	0.81[ASN][1000 genomes]
rs12199883	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206472	0.81[ASN][1000 genomes]
rs12524617	0.81[ASN][1000 genomes]
rs12527126	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12527248	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1295383	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1295384	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1295388	0.81[ASN][1000 genomes]
rs1797067	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036257	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144236	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357379	0.81[EUR][1000 genomes]
rs6569072	0.81[ASN][1000 genomes]
rs6569076	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920832	0.81[ASN][1000 genomes]
rs6932241	0.81[ASN][1000 genomes]
rs6935126	0.81[ASN][1000 genomes]
rs6936790	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73529045	0.81[ASN][1000 genomes]
rs73529086	0.81[ASN][1000 genomes]
rs7745295	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745633	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754482	0.81[ASN][1000 genomes]
rs9320689	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9320690	0.86[EUR][1000 genomes]
rs9374795	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374796	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489697	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv1845804	chr6:119747112-119771715	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119748200-119767000	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:119760600-119774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:119763400-119768200	Enhancers	Dnd41	blood
4	chr6:119763400-119768400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:119763400-119772200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:119763600-119767600	Enhancers	Adipose Nuclei	Adipose
7	chr6:119763600-119768400	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:119763600-119772200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:119764200-119767000	Weak transcription	HSMM	muscle
10	chr6:119764200-119767200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:119764400-119766800	Weak transcription	HSMMtube	muscle
12	chr6:119764600-119767000	Weak transcription	Pancreas	Pancrea
13	chr6:119765000-119767000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:119765000-119768600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:119765200-119768200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:119765200-119768200	Enhancers	K562	blood
17	chr6:119765400-119768200	Enhancers	NH-A	brain
18	chr6:119765400-119768600	Enhancers	Osteobl	bone
19	chr6:119765600-119767000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:119765600-119767000	Weak transcription	Spleen	Spleen
21	chr6:119765800-119766800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:119765800-119766800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:119765800-119766800	Weak transcription	Fetal Thymus	thymus
24	chr6:119765800-119767000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:119765800-119767000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:119765800-119767800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr6:119765800-119768200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:119765800-119768200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:119766000-119767000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:119766000-119768600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:119766000-119769000	Enhancers	Stomach Mucosa	stomach
32	chr6:119766000-119770000	Weak transcription	Primary B cells from cord blood	blood
33	chr6:119766000-119770200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr6:119766200-119767000	Enhancers	GM12878-XiMat	blood
35	chr6:119766200-119767000	Weak transcription	NHLF	lung
36	chr6:119766400-119766800	Weak transcription	NHDF-Ad	bronchial
37	chr6:119766400-119767200	Enhancers	Stomach Smooth Muscle	stomach
38	chr6:119766400-119767600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:119766400-119767600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:119766400-119768200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:119766400-119768400	Enhancers	Brain Hippocampus Middle	brain
42	chr6:119766400-119768400	Enhancers	Small Intestine	intestine
43	chr6:119766600-119766800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:119766600-119767200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:119766600-119767400	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr6:119766600-119767800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:119766600-119768400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:119766600-119768800	Enhancers	Brain Anterior Caudate	brain
49	chr6:119766600-119768800	Enhancers	Duodenum Mucosa	Duodenum

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