Variant report

Variant	rs9374796
Chromosome Location	chr6:119764348-119764349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10457355	0.81[CEU][hapmap]
rs11153809	0.81[CEU][hapmap]
rs12194357	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12206472	0.81[CEU][hapmap]
rs12527248	0.82[EUR][1000 genomes]
rs1295383	0.81[EUR][1000 genomes]
rs1295384	0.81[EUR][1000 genomes]
rs2036257	0.90[CEU][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2144236	0.80[EUR][1000 genomes]
rs2357379	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35147613	0.85[EUR][1000 genomes]
rs35305935	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6569076	0.80[EUR][1000 genomes]
rs6915559	0.80[CEU][hapmap]
rs6915947	0.80[CEU][hapmap]
rs6918913	0.80[CEU][hapmap]
rs6927955	0.80[CEU][hapmap]
rs6935126	0.81[CEU][hapmap]
rs6936020	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6936790	0.80[EUR][1000 genomes]
rs715373	0.81[CEU][hapmap]
rs715374	0.81[CEU][hapmap]
rs7741003	0.80[CEU][hapmap]
rs7753315	0.80[CEU][hapmap]
rs7754482	0.81[CEU][hapmap]
rs926859	0.81[CEU][hapmap]
rs9320689	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9320690	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374795	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9489681	0.81[CEU][hapmap]
rs9489686	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv1845804	chr6:119747112-119771715	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119748200-119767000	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:119758000-119765200	Weak transcription	Spleen	Spleen
3	chr6:119760600-119774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:119763200-119766000	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:119763400-119768200	Enhancers	Dnd41	blood
6	chr6:119763400-119768400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:119763400-119772200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:119763600-119764600	Enhancers	Thymus	Thymus
9	chr6:119763600-119765200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:119763600-119765800	Enhancers	Fetal Thymus	thymus
11	chr6:119763600-119766000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:119763600-119767600	Enhancers	Adipose Nuclei	Adipose
13	chr6:119763600-119768400	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:119763600-119772200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:119763800-119764400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:119763800-119764400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:119763800-119764400	Enhancers	HSMMtube	muscle
18	chr6:119764000-119764400	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr6:119764000-119765000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:119764000-119766600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:119764200-119764600	Enhancers	Pancreas	Pancrea
22	chr6:119764200-119765000	Enhancers	GM12878-XiMat	blood
23	chr6:119764200-119767000	Weak transcription	HSMM	muscle
24	chr6:119764200-119767200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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