Variant report

Variant	rs10457356
Chromosome Location	chr6:119689751-119689752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1022869	0.82[EUR][1000 genomes]
rs10456921	0.81[EUR][1000 genomes]
rs10457352	0.83[EUR][1000 genomes]
rs10457353	0.83[EUR][1000 genomes]
rs10457355	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10485001	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10872177	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11153800	0.88[CEU][hapmap]
rs11153803	0.81[EUR][1000 genomes]
rs11153805	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs11153808	0.83[EUR][1000 genomes]
rs11153810	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11153811	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11153812	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11751945	0.88[CEU][hapmap]
rs11755967	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11759899	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11962938	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12205260	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12205826	0.88[CEU][hapmap]
rs12206472	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12207595	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12210002	0.81[EUR][1000 genomes]
rs12524617	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1295388	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2036257	0.92[CEU][hapmap]
rs2142886	0.81[AMR][1000 genomes]
rs6569065	0.82[EUR][1000 genomes]
rs6569066	0.82[EUR][1000 genomes]
rs6569072	0.92[CEU][hapmap]
rs6909928	0.82[EUR][1000 genomes]
rs6913654	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6920832	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6927955	0.81[CEU][hapmap]
rs6932241	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6935126	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7743824	0.82[EUR][1000 genomes]
rs7754482	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7760582	0.82[EUR][1000 genomes]
rs7767198	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs926859	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119673400-119690000	Weak transcription	K562	blood
2	chr6:119677000-119691800	Weak transcription	Adipose Nuclei	Adipose
3	chr6:119679400-119691600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:119681000-119690200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:119682000-119693200	Weak transcription	Left Ventricle	heart
6	chr6:119688600-119690200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:119688800-119701400	Weak transcription	Primary B cells from cord blood	blood
8	chr6:119689000-119691200	Weak transcription	Brain Anterior Caudate	brain
9	chr6:119689000-119693400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:119689200-119690400	Weak transcription	Fetal Heart	heart
11	chr6:119689200-119694600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:119689600-119720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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