Variant report

Variant	rs62418807
Chromosome Location	chr6:119518302-119518303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119506495..119510474-chr6:119512105..119518415,7	K562	blood:
2	chr6:119510956..119512728-chr6:119517254..119518808,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4343954	1.00[AFR][1000 genomes]
rs62418809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9372521	1.00[AFR][1000 genomes]
rs9385066	1.00[AFR][1000 genomes]
rs9387627	1.00[AFR][1000 genomes]
rs9401117	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1034992	chr6:119512657-119540895	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119491800-119531200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:119492200-119527800	Weak transcription	NHEK	skin
3	chr6:119492400-119524200	Weak transcription	Fetal Stomach	stomach
4	chr6:119494000-119523600	Weak transcription	GM12878-XiMat	blood
5	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
6	chr6:119494800-119526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:119495400-119522000	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:119495600-119522200	Weak transcription	Fetal Kidney	kidney
9	chr6:119497000-119524000	Weak transcription	NHLF	lung
10	chr6:119497000-119524400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:119497000-119524400	Weak transcription	Small Intestine	intestine
12	chr6:119497200-119518600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:119498000-119536600	Weak transcription	Fetal Heart	heart
14	chr6:119498200-119527400	Strong transcription	Liver	Liver
15	chr6:119498600-119531400	Strong transcription	HepG2	liver
16	chr6:119498800-119526800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:119499400-119525400	Weak transcription	NH-A	brain
18	chr6:119499600-119524000	Weak transcription	Brain Anterior Caudate	brain
19	chr6:119499800-119524400	Weak transcription	Right Ventricle	heart
20	chr6:119501200-119522200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:119501600-119524200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:119502000-119523800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:119502000-119523800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:119502400-119525800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:119502600-119526800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:119503400-119539800	Weak transcription	Gastric	stomach
27	chr6:119503800-119524200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:119504600-119519400	Strong transcription	Adipose Nuclei	Adipose
29	chr6:119505200-119527400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:119505400-119518800	Weak transcription	Brain Substantia Nigra	brain
31	chr6:119505600-119518600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:119505800-119524000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:119506800-119530800	Weak transcription	Stomach Mucosa	stomach
34	chr6:119507800-119525000	Weak transcription	Osteobl	bone
35	chr6:119508000-119524000	Weak transcription	Spleen	Spleen
36	chr6:119508200-119522000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:119508200-119523800	Weak transcription	Ovary	ovary
38	chr6:119508200-119524400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:119509800-119530000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:119510000-119526200	Weak transcription	Brain Angular Gyrus	brain
41	chr6:119510000-119529800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:119511000-119524000	Weak transcription	Primary T cells from cord blood	blood
43	chr6:119511200-119530000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:119511400-119529800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:119511400-119530800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:119511600-119522600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:119511600-119524000	Weak transcription	Left Ventricle	heart
48	chr6:119511800-119524200	Weak transcription	Fetal Muscle Leg	muscle
49	chr6:119512000-119525000	Weak transcription	Colonic Mucosa	Colon
50	chr6:119513000-119519200	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links