Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1068588	1.00[ASN][1000 genomes]
rs12204084	1.00[ASN][1000 genomes]
rs1334922	0.88[ASN][1000 genomes]
rs1342794	0.88[ASN][1000 genomes]
rs1775617	1.00[ASN][1000 genomes]
rs589865	0.92[ASN][1000 genomes]
rs610960	0.92[ASN][1000 genomes]
rs61299241	1.00[AMR][1000 genomes]
rs62418807	1.00[AFR][1000 genomes]
rs62418809	1.00[AFR][1000 genomes]
rs639266	0.84[ASN][1000 genomes]
rs669978	1.00[ASN][1000 genomes]
rs9372521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9374769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9374770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9374774	1.00[ASN][1000 genomes]
rs9385059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9385066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9387618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387623	1.00[AMR][1000 genomes]
rs9387627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9387631	1.00[ASN][1000 genomes]
rs9401092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401110	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9401111	1.00[AMR][1000 genomes]
rs9401112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:119365200-119373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:119366800-119373600	Weak transcription	Pancreas	Pancrea
4	chr6:119367200-119370800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: