Variant report

Variant	rs639266
Chromosome Location	chr6:119381502-119381503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10456918	0.83[EUR][1000 genomes]
rs1068588	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11153778	0.81[EUR][1000 genomes]
rs11153780	0.83[EUR][1000 genomes]
rs11153791	0.85[EUR][1000 genomes]
rs12204084	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12204825	0.86[EUR][1000 genomes]
rs12207663	0.85[EUR][1000 genomes]
rs12211725	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12213327	0.85[EUR][1000 genomes]
rs12213597	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1334922	0.88[ASN][1000 genomes]
rs1342794	0.88[ASN][1000 genomes]
rs17506361	0.86[EUR][1000 genomes]
rs1775617	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4343954	0.84[ASN][1000 genomes]
rs589865	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs590004	0.99[EUR][1000 genomes]
rs610960	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs669978	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67182660	0.82[EUR][1000 genomes]
rs6902942	0.85[EUR][1000 genomes]
rs7740819	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7750373	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7771525	0.95[EUR][1000 genomes]
rs7772912	0.80[EUR][1000 genomes]
rs7775251	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7775275	0.82[EUR][1000 genomes]
rs813233	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9374756	0.82[EUR][1000 genomes]
rs9374760	0.85[EUR][1000 genomes]
rs9374762	0.85[EUR][1000 genomes]
rs9374774	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9385066	0.84[ASN][1000 genomes]
rs9387627	1.00[CHB][hapmap]
rs9387631	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9401101	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv528632	chr6:119380885-119397860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119375000-119382000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:119378200-119388400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:119380800-119383000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:119380800-119384400	Weak transcription	Fetal Lung	lung
5	chr6:119381200-119382600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:119381200-119383000	Enhancers	K562	blood
7	chr6:119381400-119381600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:119381400-119382000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:119381400-119382000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:119381400-119382200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:119381400-119382400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:119381400-119382400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:119381400-119382400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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