Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1068588	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12204084	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12211725	0.86[EUR][1000 genomes]
rs12213597	0.86[EUR][1000 genomes]
rs12216130	0.86[EUR][1000 genomes]
rs1334922	0.96[ASN][1000 genomes]
rs1342794	0.96[ASN][1000 genomes]
rs1775617	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4343954	0.92[ASN][1000 genomes]
rs590004	0.88[EUR][1000 genomes]
rs610960	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs639266	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs669978	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7740819	0.86[EUR][1000 genomes]
rs7750373	0.84[EUR][1000 genomes]
rs7771525	0.84[EUR][1000 genomes]
rs7775251	0.86[EUR][1000 genomes]
rs813233	0.88[EUR][1000 genomes]
rs9374774	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9385066	0.92[ASN][1000 genomes]
rs9387627	0.88[ASN][1000 genomes]
rs9387631	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9401117	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:119365200-119373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:119366800-119373600	Weak transcription	Pancreas	Pancrea
4	chr6:119372000-119372600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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