Variant report

Variant	rs1334922
Chromosome Location	chr6:119373172-119373173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1068588	0.88[ASN][1000 genomes]
rs12204084	0.88[ASN][1000 genomes]
rs1342794	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775617	0.88[ASN][1000 genomes]
rs4343954	0.88[ASN][1000 genomes]
rs589865	0.96[ASN][1000 genomes]
rs610960	0.81[ASN][1000 genomes]
rs639266	0.88[ASN][1000 genomes]
rs669978	0.88[ASN][1000 genomes]
rs9374774	0.88[ASN][1000 genomes]
rs9374777	0.81[CEU][hapmap]
rs9385066	0.88[ASN][1000 genomes]
rs9387627	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9387631	0.88[ASN][1000 genomes]
rs9401117	0.84[ASN][1000 genomes]
rs9401118	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1334922	ASF1A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:119365200-119373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:119366800-119373600	Weak transcription	Pancreas	Pancrea
4	chr6:119372600-119373600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:119373000-119375800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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