Variant report

Variant	rs1775617
Chromosome Location	chr6:119356833-119356834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119345576..119347207-chr6:119354495..119357299,2	K562	blood:
2	chr6:119356353..119358276-chr6:119400099..119402826,2	K562	blood:
3	chr6:119356776..119359513-chr6:119398681..119401599,2	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10456918	0.85[EUR][1000 genomes]
rs1068588	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153778	0.83[EUR][1000 genomes]
rs11153780	0.85[EUR][1000 genomes]
rs11153791	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12204084	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204825	0.87[EUR][1000 genomes]
rs12207663	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12211725	0.99[EUR][1000 genomes]
rs12213327	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12213597	0.99[EUR][1000 genomes]
rs12216130	0.81[EUR][1000 genomes]
rs1334922	0.88[ASN][1000 genomes]
rs1342794	0.88[ASN][1000 genomes]
rs17506361	0.87[EUR][1000 genomes]
rs4343954	1.00[ASN][1000 genomes]
rs589865	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs590004	0.97[EUR][1000 genomes]
rs610960	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs639266	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs669978	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67182660	0.86[EUR][1000 genomes]
rs6902942	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7740819	0.99[EUR][1000 genomes]
rs7750373	0.97[EUR][1000 genomes]
rs7771525	0.97[EUR][1000 genomes]
rs7772912	0.84[EUR][1000 genomes]
rs7775251	0.99[EUR][1000 genomes]
rs7775275	0.86[EUR][1000 genomes]
rs813233	0.97[EUR][1000 genomes]
rs9374756	0.86[EUR][1000 genomes]
rs9374760	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9374762	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9374774	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385066	1.00[ASN][1000 genomes]
rs9387627	0.95[ASN][1000 genomes]
rs9387631	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401101	0.87[EUR][1000 genomes]
rs9401117	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119352400-119361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:119352800-119357000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:119354000-119361000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:119355400-119358200	Enhancers	HSMM	muscle
6	chr6:119355800-119357000	Enhancers	HepG2	liver
7	chr6:119355800-119357400	Enhancers	Brain Hippocampus Middle	brain
8	chr6:119355800-119357600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:119355800-119358800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:119356000-119357200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr6:119356000-119357200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:119356000-119357200	Enhancers	Fetal Muscle Leg	muscle
13	chr6:119356000-119357400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:119356000-119357800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:119356000-119358600	Enhancers	Fetal Lung	lung
16	chr6:119356200-119357000	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:119356200-119357200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:119356200-119357200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr6:119356200-119357400	Enhancers	HSMMtube	muscle
20	chr6:119356400-119357000	Active TSS	Lung	lung
21	chr6:119356400-119357200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:119356400-119357400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr6:119356400-119357800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:119356400-119357800	Enhancers	Brain Cingulate Gyrus	brain
25	chr6:119356400-119368800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr6:119356600-119357000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:119356600-119357000	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr6:119356600-119357000	Enhancers	Fetal Intestine Large	intestine
29	chr6:119356600-119357200	Enhancers	Adipose Nuclei	Adipose
30	chr6:119356600-119360000	Enhancers	K562	blood
31	chr6:119356600-119360800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:119356800-119357200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:119356800-119357200	Enhancers	Brain Angular Gyrus	brain
34	chr6:119356800-119358000	Weak transcription	Brain Anterior Caudate	brain
35	chr6:119356800-119358600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:119356800-119360800	Weak transcription	Placenta	Placenta
37	chr6:119356800-119366600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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