Variant report

Variant	rs10456918
Chromosome Location	chr6:119233480-119233481
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119232743..119235514-chr6:119237680..119239881,2	MCF-7	breast:
2	chr6:119215135..119217668-chr6:119233388..119236906,4	MCF-7	breast:
3	chr6:119230575..119233584-chr6:119242205..119244897,3	MCF-7	breast:
4	chr6:119228532..119230946-chr6:119231114..119234681,5	K562	blood:
5	chr6:119232668..119234760-chr6:119235529..119238210,3	K562	blood:

Variant related genes	Relation type
ENSG00000111875	Chromatin interaction
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1068588	0.84[EUR][1000 genomes]
rs11153777	0.88[EUR][1000 genomes]
rs11153778	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11153781	0.82[EUR][1000 genomes]
rs11153791	0.96[EUR][1000 genomes]
rs12190099	0.88[EUR][1000 genomes]
rs12202077	0.86[EUR][1000 genomes]
rs12204084	0.86[EUR][1000 genomes]
rs12204825	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12207663	0.96[EUR][1000 genomes]
rs12211725	0.86[EUR][1000 genomes]
rs12213327	0.96[EUR][1000 genomes]
rs12213597	0.86[EUR][1000 genomes]
rs17506361	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1775617	0.85[EUR][1000 genomes]
rs590004	0.84[EUR][1000 genomes]
rs610960	0.84[EUR][1000 genomes]
rs639266	0.83[EUR][1000 genomes]
rs669978	0.84[EUR][1000 genomes]
rs67182660	0.99[EUR][1000 genomes]
rs6902942	0.96[EUR][1000 genomes]
rs7740819	0.86[EUR][1000 genomes]
rs7750373	0.84[EUR][1000 genomes]
rs7771525	0.87[EUR][1000 genomes]
rs7772912	0.97[EUR][1000 genomes]
rs7775251	0.86[EUR][1000 genomes]
rs7775275	0.99[EUR][1000 genomes]
rs813233	0.84[EUR][1000 genomes]
rs9374756	0.99[EUR][1000 genomes]
rs9374760	0.96[EUR][1000 genomes]
rs9374762	0.96[EUR][1000 genomes]
rs9374774	0.86[EUR][1000 genomes]
rs9387631	0.86[EUR][1000 genomes]
rs9401101	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119216600-119233800	Weak transcription	Lung	lung
2	chr6:119216600-119236600	Weak transcription	Gastric	stomach
3	chr6:119216600-119243800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:119216800-119235800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:119217000-119242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:119217800-119236200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:119218600-119247000	Strong transcription	Fetal Thymus	thymus
8	chr6:119218800-119237200	Strong transcription	Primary hematopoietic stem cells	blood
9	chr6:119219200-119254000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr6:119219200-119254400	Strong transcription	Placenta	Placenta
11	chr6:119219600-119253000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:119219600-119253800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:119220600-119234400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:119220600-119236600	Weak transcription	Esophagus	oesophagus
15	chr6:119220800-119233600	Weak transcription	Right Ventricle	heart
16	chr6:119221200-119255800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:119221400-119246800	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:119221600-119236600	Weak transcription	Psoas Muscle	Psoas
19	chr6:119221600-119237400	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:119221600-119247800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr6:119221800-119233800	Weak transcription	Ovary	ovary
22	chr6:119221800-119234400	Strong transcription	K562	blood
23	chr6:119222000-119243200	Strong transcription	HepG2	liver
24	chr6:119222000-119254000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:119222000-119254400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:119222000-119255200	Weak transcription	Fetal Heart	heart
27	chr6:119222200-119237000	Strong transcription	Primary B cells from cord blood	blood
28	chr6:119222200-119245400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:119222200-119253400	Strong transcription	Fetal Intestine Large	intestine
30	chr6:119222400-119246600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr6:119222400-119249600	Strong transcription	Primary B cells from peripheral blood	blood
32	chr6:119222600-119234200	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr6:119222600-119251400	Strong transcription	Dnd41	blood
34	chr6:119222600-119253800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:119222600-119253800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:119223600-119235600	Strong transcription	Liver	Liver
37	chr6:119224000-119254000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:119224200-119245600	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:119224200-119246000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:119224200-119252800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:119224400-119245600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr6:119224600-119233600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:119224600-119235800	Strong transcription	Adipose Nuclei	Adipose
44	chr6:119224600-119236600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:119224600-119237200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:119224600-119237200	Strong transcription	HUVEC	blood vessel
47	chr6:119224600-119254000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:119224800-119254800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:119225000-119238800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:119225200-119233800	Weak transcription	Brain Substantia Nigra	brain

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