Variant report

Variant	rs7775251
Chromosome Location	chr6:119348855-119348856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119346161..119349573-chr6:119350909..119353024,3	K562	blood:
2	chr6:119348800..119350573-chr6:119357761..119359797,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10456918	0.86[EUR][1000 genomes]
rs1068588	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153778	0.90[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs11153780	0.86[EUR][1000 genomes]
rs11153791	0.87[EUR][1000 genomes]
rs12204084	0.90[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12204825	0.88[EUR][1000 genomes]
rs12207663	0.87[EUR][1000 genomes]
rs12211725	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12213327	0.87[EUR][1000 genomes]
rs12213597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12216130	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17506361	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1775617	0.99[EUR][1000 genomes]
rs589865	0.86[EUR][1000 genomes]
rs590004	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs610960	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs639266	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs669978	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67182660	0.85[EUR][1000 genomes]
rs6902942	0.87[EUR][1000 genomes]
rs7740819	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7771525	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7772912	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs7775275	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs813233	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9374756	0.85[EUR][1000 genomes]
rs9374760	0.87[EUR][1000 genomes]
rs9374762	0.87[EUR][1000 genomes]
rs9374774	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9387631	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9401101	0.90[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119325400-119349600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:119331400-119349800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:119331400-119356000	Weak transcription	Ovary	ovary
5	chr6:119331600-119349200	Weak transcription	Adipose Nuclei	Adipose
6	chr6:119331600-119355800	Weak transcription	K562	blood
7	chr6:119334200-119355800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:119339400-119356200	Weak transcription	Placenta	Placenta
9	chr6:119341400-119356200	Weak transcription	Fetal Stomach	stomach
10	chr6:119343400-119356400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:119343600-119355800	Weak transcription	Fetal Intestine Small	intestine
12	chr6:119343800-119349800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:119345200-119349200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:119345200-119350400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:119345800-119349600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:119345800-119350200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:119346000-119350000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:119346200-119349000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:119346600-119349800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:119346600-119350000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:119347000-119349000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:119347000-119349400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr6:119347000-119349600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:119347400-119356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:119347800-119349400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:119347800-119356000	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:119348000-119350200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:119348400-119349200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr6:119348600-119349200	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr6:119348600-119349400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:119348600-119349800	Enhancers	HUVEC	blood vessel
32	chr6:119348800-119349800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:119348800-119350200	Enhancers	HUES6 Cell Line	embryonic stem cell

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