Variant report

Variant	rs6902942
Chromosome Location	chr6:119258112-119258113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119257082..119259694-chr6:119259960..119261722,2	K562	blood:
2	chr6:119213694..119219544-chr6:119251621..119258172,21	K562	blood:
3	chr6:119256349..119258481-chr6:119264695..119266812,2	K562	blood:
4	chr6:119255727..119258203-chr6:119400226..119402388,2	K562	blood:
5	chr6:119253238..119258280-chr6:119398045..119402661,8	K562	blood:
6	chr6:119256460..119259122-chr6:119259921..119263121,4	K562	blood:
7	chr6:119255269..119257410-chr6:119258085..119262508,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000111875	Chromatin interaction
ENSG00000111879	Chromatin interaction
ENSG00000253194	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10456918	0.96[EUR][1000 genomes]
rs1068588	0.86[EUR][1000 genomes]
rs11153777	0.88[EUR][1000 genomes]
rs11153778	0.94[EUR][1000 genomes]
rs11153780	0.96[EUR][1000 genomes]
rs11153781	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11153791	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190099	0.88[EUR][1000 genomes]
rs12202077	0.86[EUR][1000 genomes]
rs12204084	0.87[EUR][1000 genomes]
rs12204825	0.99[EUR][1000 genomes]
rs12207663	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211725	0.87[EUR][1000 genomes]
rs12213327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213597	0.87[EUR][1000 genomes]
rs17506361	0.99[EUR][1000 genomes]
rs1775617	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs590004	0.86[EUR][1000 genomes]
rs610960	0.86[EUR][1000 genomes]
rs639266	0.85[EUR][1000 genomes]
rs669978	0.86[EUR][1000 genomes]
rs67182660	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7740819	0.87[EUR][1000 genomes]
rs7750373	0.86[EUR][1000 genomes]
rs7771525	0.89[EUR][1000 genomes]
rs7772912	0.95[EUR][1000 genomes]
rs7775251	0.87[EUR][1000 genomes]
rs7775275	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs813233	0.86[EUR][1000 genomes]
rs9374756	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374769	1.00[ASN][1000 genomes]
rs9374770	1.00[ASN][1000 genomes]
rs9374774	0.87[EUR][1000 genomes]
rs9385059	0.95[ASN][1000 genomes]
rs9387618	1.00[ASN][1000 genomes]
rs9387631	0.87[EUR][1000 genomes]
rs9401092	0.95[ASN][1000 genomes]
rs9401094	0.95[ASN][1000 genomes]
rs9401095	0.95[ASN][1000 genomes]
rs9401096	0.95[ASN][1000 genomes]
rs9401100	1.00[ASN][1000 genomes]
rs9401101	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401110	1.00[ASN][1000 genomes]
rs9401111	1.00[ASN][1000 genomes]
rs9401112	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16596	chr6:119251007-119272087	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
2	nsv437523	chr6:119251971-119260280	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119256600-119260800	Weak transcription	Esophagus	oesophagus
2	chr6:119256600-119260800	Weak transcription	Left Ventricle	heart
3	chr6:119256600-119261800	Weak transcription	Gastric	stomach
4	chr6:119256600-119262000	Weak transcription	Pancreas	Pancrea
5	chr6:119256800-119258400	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:119256800-119260800	Weak transcription	Fetal Stomach	stomach
7	chr6:119256800-119260800	Weak transcription	Right Ventricle	heart
8	chr6:119256800-119261000	Weak transcription	Aorta	Aorta
9	chr6:119256800-119262000	Weak transcription	Thymus	Thymus
10	chr6:119257000-119258600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:119257000-119260400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:119257000-119260400	Weak transcription	Fetal Lung	lung
13	chr6:119257000-119260800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:119257000-119262400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:119257200-119260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:119257200-119260600	Weak transcription	Liver	Liver
17	chr6:119257200-119261200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:119257400-119259600	Weak transcription	Primary T cells from cord blood	blood
19	chr6:119257400-119260000	Weak transcription	HSMM	muscle
20	chr6:119257400-119260600	Weak transcription	Adipose Nuclei	Adipose
21	chr6:119257400-119261000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:119257400-119262000	Weak transcription	Primary B cells from cord blood	blood
23	chr6:119257600-119258200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:119257600-119258600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr6:119257600-119259000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:119257800-119258400	Enhancers	Dnd41	blood
27	chr6:119257800-119260800	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:119257800-119261600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:119258000-119258600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:119258000-119261600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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