Variant report

Variant	rs9385059
Chromosome Location	chr6:119236902-119236903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119215135..119217668-chr6:119233388..119236906,4	MCF-7	breast:
2	chr6:119236200..119239716-chr6:119244057..119245894,3	MCF-7	breast:
3	chr6:119215924..119218586-chr6:119236069..119238504,2	K562	blood:
4	chr6:119232668..119234760-chr6:119235529..119238210,3	K562	blood:
5	chr6:119235128..119240237-chr6:119246100..119252076,6	K562	blood:
6	chr6:119235730..119238725-chr6:119250576..119253329,2	K562	blood:

Variant related genes	Relation type
ENSG00000111875	Chromatin interaction
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11153781	0.91[ASN][1000 genomes]
rs11153791	0.95[ASN][1000 genomes]
rs12207663	0.95[ASN][1000 genomes]
rs12213327	0.95[ASN][1000 genomes]
rs1775613	1.00[JPT][hapmap]
rs3756939	1.00[JPT][hapmap]
rs4343954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61299241	1.00[AMR][1000 genomes]
rs67182660	1.00[ASN][1000 genomes]
rs6902942	0.95[ASN][1000 genomes]
rs7775275	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs794249	1.00[JPT][hapmap]
rs9372515	0.85[AMR][1000 genomes]
rs9372521	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9374756	1.00[ASN][1000 genomes]
rs9374760	0.95[ASN][1000 genomes]
rs9374762	0.95[ASN][1000 genomes]
rs9374769	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9374770	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9385066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387602	0.85[AMR][1000 genomes]
rs9387607	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387618	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9387623	1.00[AMR][1000 genomes]
rs9387627	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9401094	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9401095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9401096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9401100	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9401101	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9401110	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9401111	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9401112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119216600-119243800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:119217000-119242200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:119218600-119247000	Strong transcription	Fetal Thymus	thymus
4	chr6:119218800-119237200	Strong transcription	Primary hematopoietic stem cells	blood
5	chr6:119219200-119254000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:119219200-119254400	Strong transcription	Placenta	Placenta
7	chr6:119219600-119253000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:119219600-119253800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:119221200-119255800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:119221400-119246800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:119221600-119237400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:119221600-119247800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:119222000-119243200	Strong transcription	HepG2	liver
14	chr6:119222000-119254000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:119222000-119254400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:119222000-119255200	Weak transcription	Fetal Heart	heart
17	chr6:119222200-119237000	Strong transcription	Primary B cells from cord blood	blood
18	chr6:119222200-119245400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:119222200-119253400	Strong transcription	Fetal Intestine Large	intestine
20	chr6:119222400-119246600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:119222400-119249600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr6:119222600-119251400	Strong transcription	Dnd41	blood
23	chr6:119222600-119253800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:119222600-119253800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:119224000-119254000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:119224200-119245600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:119224200-119246000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:119224200-119252800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:119224400-119245600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr6:119224600-119237200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:119224600-119237200	Strong transcription	HUVEC	blood vessel
32	chr6:119224600-119254000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:119224800-119254800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:119225000-119238800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:119225400-119237000	Strong transcription	A549	lung
36	chr6:119225400-119238600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:119226000-119255200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:119226800-119237200	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr6:119227000-119254800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:119227200-119237200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:119227200-119241800	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:119227400-119252000	Weak transcription	Small Intestine	intestine
43	chr6:119227400-119253800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr6:119227600-119242600	Weak transcription	Stomach Mucosa	stomach
45	chr6:119227600-119247400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr6:119227800-119239200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:119227800-119254800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr6:119228000-119253000	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr6:119228200-119237200	Strong transcription	Fetal Lung	lung
50	chr6:119228200-119253400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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