Variant report

Variant	rs1775613
Chromosome Location	chr6:119346010-119346011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119254679..119257709-chr6:119345314..119348815,3	K562	blood:
2	chr6:119254455..119256179-chr6:119344238..119346814,2	K562	blood:
3	chr6:119345576..119347207-chr6:119354495..119357299,2	K562	blood:
4	chr6:119344453..119347404-chr6:119349767..119351941,2	K562	blood:

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000253194	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1775616	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1775620	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889561	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066408	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357021	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357023	1.00[ASN][1000 genomes]
rs2782573	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797356	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756939	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7738420	1.00[ASN][1000 genomes]
rs794249	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794251	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794257	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9372521	1.00[JPT][hapmap]
rs9374769	1.00[JPT][hapmap]
rs9374770	1.00[JPT][hapmap]
rs9385059	1.00[JPT][hapmap]
rs9387607	1.00[JPT][hapmap]
rs9387618	1.00[JPT][hapmap]
rs9387627	1.00[JPT][hapmap]
rs9398496	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401094	1.00[JPT][hapmap]
rs9401100	1.00[JPT][hapmap]
rs9401101	1.00[JPT][hapmap]
rs9489577	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	esv3369953	chr6:119345948-119346384	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119325400-119349600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:119328600-119348800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:119330400-119347000	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:119331400-119349800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:119331400-119356000	Weak transcription	Ovary	ovary
7	chr6:119331600-119349200	Weak transcription	Adipose Nuclei	Adipose
8	chr6:119331600-119355800	Weak transcription	K562	blood
9	chr6:119334200-119355800	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:119334800-119347000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:119339400-119356200	Weak transcription	Placenta	Placenta
12	chr6:119340200-119347000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:119341400-119346200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:119341400-119356200	Weak transcription	Fetal Stomach	stomach
15	chr6:119343400-119356400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:119343600-119355800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:119343800-119349800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:119344000-119347000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:119344600-119348400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:119345200-119346200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:119345200-119349200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:119345200-119350400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:119345400-119346200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:119345600-119346200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:119345600-119346800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:119345600-119347000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:119345800-119346600	Weak transcription	Fetal Lung	lung
28	chr6:119345800-119346800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr6:119345800-119349600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:119345800-119350200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr6:119346000-119347000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr6:119346000-119348200	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:119346000-119350000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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