Variant report

Variant	rs794257
Chromosome Location	chr6:119353212-119353213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1775613	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1775616	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1775620	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1889561	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2066408	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2357021	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2357023	0.96[ASN][1000 genomes]
rs2782573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797356	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3756939	0.94[ASN][1000 genomes]
rs7738420	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs794249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs794251	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9398496	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9489577	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119331400-119356000	Weak transcription	Ovary	ovary
3	chr6:119331600-119355800	Weak transcription	K562	blood
4	chr6:119334200-119355800	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:119339400-119356200	Weak transcription	Placenta	Placenta
6	chr6:119341400-119356200	Weak transcription	Fetal Stomach	stomach
7	chr6:119343400-119356400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:119343600-119355800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:119347400-119356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:119347800-119356000	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:119350000-119353600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:119350200-119355400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:119350200-119356000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:119350400-119355400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:119350400-119355800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:119350400-119355800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:119352400-119361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:119352800-119357000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:119353000-119355400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:119353200-119355400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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