Variant report

Variant	rs7738420
Chromosome Location	chr6:119349536-119349537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119346161..119349573-chr6:119350909..119353024,3	K562	blood:
2	chr6:119348800..119350573-chr6:119357761..119359797,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1775613	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1775616	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1775620	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889561	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066408	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357021	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357023	1.00[ASN][1000 genomes]
rs2782573	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797356	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756939	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6910782	0.88[CHB][hapmap]
rs794249	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794251	1.00[ASN][1000 genomes]
rs794257	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9372521	1.00[JPT][hapmap]
rs9374769	1.00[JPT][hapmap]
rs9374770	1.00[JPT][hapmap]
rs9385059	1.00[JPT][hapmap]
rs9387607	1.00[JPT][hapmap]
rs9387618	1.00[JPT][hapmap]
rs9387627	1.00[JPT][hapmap]
rs9398496	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401094	1.00[JPT][hapmap]
rs9401100	1.00[JPT][hapmap]
rs9401101	1.00[JPT][hapmap]
rs9489577	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119325400-119349600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:119331400-119349800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:119331400-119356000	Weak transcription	Ovary	ovary
5	chr6:119331600-119355800	Weak transcription	K562	blood
6	chr6:119334200-119355800	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:119339400-119356200	Weak transcription	Placenta	Placenta
8	chr6:119341400-119356200	Weak transcription	Fetal Stomach	stomach
9	chr6:119343400-119356400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:119343600-119355800	Weak transcription	Fetal Intestine Small	intestine
11	chr6:119343800-119349800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:119345200-119350400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:119345800-119349600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:119345800-119350200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:119346000-119350000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:119346600-119349800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:119346600-119350000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:119347000-119349600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:119347400-119356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:119347800-119356000	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:119348000-119350200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:119348600-119349800	Enhancers	HUVEC	blood vessel
23	chr6:119348800-119349800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:119348800-119350200	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:119349000-119350200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:119349200-119349600	Enhancers	Adipose Nuclei	Adipose
27	chr6:119349200-119349800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:119349200-119350400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
29	chr6:119349400-119349800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr6:119349400-119350000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
31	chr6:119349400-119351200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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