Variant report

Variant	rs9387607
Chromosome Location	chr6:119150218-119150219
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119148024..119150788-chr6:119254470..119256543,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253194	Chromatin interaction
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1775613	1.00[JPT][hapmap]
rs3756939	1.00[JPT][hapmap]
rs61299241	1.00[AMR][1000 genomes]
rs794249	1.00[JPT][hapmap]
rs9372515	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9372521	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9374769	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9374770	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9385059	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387602	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9387618	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387623	1.00[AMR][1000 genomes]
rs9387627	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401094	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401100	1.00[JPT][hapmap]
rs9401101	1.00[JPT][hapmap]
rs9401110	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9401111	1.00[AMR][1000 genomes]
rs9401112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119128600-119151600	Weak transcription	Colonic Mucosa	Colon
2	chr6:119132200-119150600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:119132400-119150800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:119133400-119151800	Weak transcription	Fetal Kidney	kidney
5	chr6:119134000-119150600	Weak transcription	Hela-S3	cervix
6	chr6:119135200-119150600	Weak transcription	NHLF	lung
7	chr6:119135400-119151000	Weak transcription	NH-A	brain
8	chr6:119135400-119151400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:119135800-119151000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:119138000-119150800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:119142800-119150400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:119143000-119150400	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr6:119143200-119150400	Weak transcription	Fetal Brain Male	brain
14	chr6:119143200-119151000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr6:119143400-119150400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr6:119143400-119150400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:119143400-119150400	Strong transcription	Fetal Intestine Large	intestine
18	chr6:119143400-119151200	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:119143600-119150400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:119143600-119150400	Strong transcription	Aorta	Aorta
21	chr6:119143600-119150600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:119143600-119150600	Strong transcription	Dnd41	blood
23	chr6:119143600-119150800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:119143600-119150800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:119144000-119150800	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:119144200-119150400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:119144200-119154400	Weak transcription	Brain Germinal Matrix	brain
28	chr6:119144600-119150800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr6:119144600-119151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:119144800-119152000	Weak transcription	Spleen	Spleen
31	chr6:119144800-119160400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:119144800-119173800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:119145600-119150400	Strong transcription	Liver	Liver
34	chr6:119145600-119150400	Strong transcription	Ovary	ovary
35	chr6:119145800-119150400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:119145800-119150400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:119145800-119150400	Strong transcription	Adipose Nuclei	Adipose
38	chr6:119145800-119150400	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr6:119145800-119150600	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:119146000-119150400	Strong transcription	Fetal Thymus	thymus
41	chr6:119146000-119150600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:119146200-119150400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:119146200-119150400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr6:119146200-119150400	Strong transcription	Left Ventricle	heart
45	chr6:119146200-119150600	Strong transcription	Primary T cells from cord blood	blood
46	chr6:119146200-119150600	Strong transcription	Fetal Muscle Leg	muscle
47	chr6:119146200-119150800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:119146200-119150800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:119146400-119150400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:119146400-119150400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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