Variant report

Variant	rs9374769
Chromosome Location	chr6:119279937-119279938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119278416..119281627-chr6:119281767..119285560,4	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11153781	0.86[ASN][1000 genomes]
rs11153791	1.00[ASN][1000 genomes]
rs12207663	1.00[ASN][1000 genomes]
rs12213327	1.00[ASN][1000 genomes]
rs1775613	1.00[JPT][hapmap]
rs3756939	1.00[JPT][hapmap]
rs4343954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61299241	1.00[AMR][1000 genomes]
rs67182660	0.95[ASN][1000 genomes]
rs6902942	1.00[ASN][1000 genomes]
rs7775275	0.95[ASN][1000 genomes]
rs794249	1.00[JPT][hapmap]
rs9372515	0.85[AMR][1000 genomes]
rs9372521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9374756	0.95[ASN][1000 genomes]
rs9374760	1.00[ASN][1000 genomes]
rs9374762	1.00[ASN][1000 genomes]
rs9374770	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9385059	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9385066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387602	0.85[AMR][1000 genomes]
rs9387607	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9387618	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9387623	1.00[AMR][1000 genomes]
rs9387627	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9401092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9401094	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9401095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9401096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9401100	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9401101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9401110	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9401111	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9401112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9401117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119272000-119281000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119275200-119286800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:119277000-119288400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:119277400-119281200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:119277600-119283200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:119279600-119280200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:119279600-119298200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:119279800-119280000	Enhancers	Primary T cells from cord blood	blood
9	chr6:119279800-119280200	Enhancers	Dnd41	blood
10	chr6:119279800-119286200	Weak transcription	Fetal Intestine Small	intestine
11	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose

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