Variant report

Variant	rs12207663
Chromosome Location	chr6:119273280-119273281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119253778..119258013-chr6:119272505..119276795,4	K562	blood:

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000253194	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10456918	0.96[EUR][1000 genomes]
rs1068588	0.86[EUR][1000 genomes]
rs11153777	0.88[EUR][1000 genomes]
rs11153778	0.94[EUR][1000 genomes]
rs11153780	0.96[EUR][1000 genomes]
rs11153781	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11153791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190099	0.88[EUR][1000 genomes]
rs12202077	0.86[EUR][1000 genomes]
rs12204084	0.87[EUR][1000 genomes]
rs12204825	0.99[EUR][1000 genomes]
rs12211725	0.87[EUR][1000 genomes]
rs12213327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213597	0.87[EUR][1000 genomes]
rs17506361	0.99[EUR][1000 genomes]
rs1775617	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs590004	0.86[EUR][1000 genomes]
rs610960	0.86[EUR][1000 genomes]
rs639266	0.85[EUR][1000 genomes]
rs669978	0.86[EUR][1000 genomes]
rs67182660	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6902942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740819	0.87[EUR][1000 genomes]
rs7750373	0.86[EUR][1000 genomes]
rs7771525	0.89[EUR][1000 genomes]
rs7772912	0.95[EUR][1000 genomes]
rs7775251	0.87[EUR][1000 genomes]
rs7775275	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs813233	0.86[EUR][1000 genomes]
rs9374756	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374760	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374762	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374769	1.00[ASN][1000 genomes]
rs9374770	1.00[ASN][1000 genomes]
rs9374774	0.87[EUR][1000 genomes]
rs9385059	0.95[ASN][1000 genomes]
rs9387618	1.00[ASN][1000 genomes]
rs9387631	0.87[EUR][1000 genomes]
rs9401092	0.95[ASN][1000 genomes]
rs9401094	0.95[ASN][1000 genomes]
rs9401095	0.95[ASN][1000 genomes]
rs9401096	0.95[ASN][1000 genomes]
rs9401100	1.00[ASN][1000 genomes]
rs9401101	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401110	1.00[ASN][1000 genomes]
rs9401111	1.00[ASN][1000 genomes]
rs9401112	0.81[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119272000-119281000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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