Variant report

Variant	rs17506361
Chromosome Location	chr6:119279318-119279319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119278416..119281627-chr6:119281767..119285560,4	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10456918	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1068588	0.86[EUR][1000 genomes]
rs11153777	0.89[EUR][1000 genomes]
rs11153778	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11153780	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11153781	0.83[EUR][1000 genomes]
rs11153791	0.99[EUR][1000 genomes]
rs12190099	0.89[EUR][1000 genomes]
rs12202077	0.87[EUR][1000 genomes]
rs12204084	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12204825	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12207663	0.99[EUR][1000 genomes]
rs12211725	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12213327	0.99[EUR][1000 genomes]
rs12213597	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12216130	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1775617	0.87[EUR][1000 genomes]
rs2295709	0.86[CEU][hapmap]
rs590004	0.86[EUR][1000 genomes]
rs610960	0.87[EUR][1000 genomes]
rs639266	0.86[EUR][1000 genomes]
rs669978	0.86[EUR][1000 genomes]
rs67182660	0.96[EUR][1000 genomes]
rs6902942	0.99[EUR][1000 genomes]
rs7740819	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7750373	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7771525	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7772912	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7775251	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7775275	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs794614	0.86[CEU][hapmap]
rs813233	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9374756	0.96[EUR][1000 genomes]
rs9374760	0.99[EUR][1000 genomes]
rs9374762	0.99[EUR][1000 genomes]
rs9374774	0.88[EUR][1000 genomes]
rs9387631	0.88[EUR][1000 genomes]
rs9401101	1.00[CEU][hapmap];0.97[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119272000-119281000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119275200-119286800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:119277000-119288400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:119277400-119281200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:119277600-119283200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links