Variant report

Variant	rs794614
Chromosome Location	chr6:119284884-119284885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119284318..119286217-chr6:119469822..119472613,2	K562	blood:
2	chr6:119282607..119285041-chr6:119393256..119395593,2	K562	blood:

Variant related genes	Relation type
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1087455	0.80[ASN][1000 genomes]
rs11153778	0.86[CEU][hapmap]
rs11967399	0.86[ASN][1000 genomes]
rs11967889	0.86[ASN][1000 genomes]
rs12191819	0.82[JPT][hapmap]
rs12197931	0.82[JPT][hapmap]
rs12204084	0.86[CEU][hapmap]
rs1407205	0.82[JPT][hapmap]
rs17506361	0.86[CEU][hapmap]
rs1762200	0.83[ASN][1000 genomes]
rs2051056	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2051057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2295709	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2357020	0.87[ASN][1000 genomes]
rs2357030	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs2782575	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2797352	0.81[ASN][1000 genomes]
rs284914	0.82[JPT][hapmap]
rs284919	0.95[CEU][hapmap];0.94[CHB][hapmap];0.81[EUR][1000 genomes]
rs2884078	0.88[CHB][hapmap];0.83[CHD][hapmap]
rs3798595	0.82[JPT][hapmap]
rs415441	0.81[EUR][1000 genomes]
rs4946383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4946384	0.82[JPT][hapmap]
rs57100274	0.84[ASN][1000 genomes]
rs57285368	0.86[ASN][1000 genomes]
rs6910327	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs6910850	0.82[CHB][hapmap]
rs72970448	0.80[ASN][1000 genomes]
rs768996	0.82[JPT][hapmap]
rs7742473	0.82[CHD][hapmap];0.94[JPT][hapmap]
rs7772912	0.86[CEU][hapmap]
rs7775275	0.86[CEU][hapmap]
rs794260	0.81[ASN][1000 genomes]
rs794261	0.83[ASN][1000 genomes]
rs794262	0.94[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs794263	0.83[ASN][1000 genomes]
rs794264	0.83[ASN][1000 genomes]
rs794266	0.83[ASN][1000 genomes]
rs794605	0.89[ASN][1000 genomes]
rs794606	0.80[ASN][1000 genomes]
rs794607	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs794608	0.80[ASN][1000 genomes]
rs794611	0.80[ASN][1000 genomes]
rs797017	0.80[ASN][1000 genomes]
rs811201	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs813812	0.81[ASN][1000 genomes]
rs9374757	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9374777	0.88[CHB][hapmap];0.83[CHD][hapmap]
rs9387609	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9401101	0.86[CEU][hapmap]
rs9401113	0.86[ASN][1000 genomes]
rs9401118	0.88[CHB][hapmap];0.83[CHD][hapmap]
rs9481870	0.82[JPT][hapmap]
rs9481877	0.80[ASN][1000 genomes]
rs9481878	0.80[ASN][1000 genomes]
rs9489526	0.94[JPT][hapmap]
rs9489535	0.82[JPT][hapmap]
rs9489536	0.82[JPT][hapmap]
rs9489543	0.86[JPT][hapmap]
rs9489544	0.82[JPT][hapmap]
rs962393	0.82[CHB][hapmap];0.94[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs794614	MCMDC1	cis	multi-tissue	Pritchard
rs794614	MCM9	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119275200-119286800	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:119277000-119288400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:119279600-119298200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:119279800-119286200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:119280400-119293000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:119281400-119286400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:119281400-119293200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:119281600-119286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:119281600-119286600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:119281600-119286800	Weak transcription	Placenta	Placenta
13	chr6:119281600-119298000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:119281600-119298000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:119281600-119299400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:119281600-119303200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:119283200-119285000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:119283600-119302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:119284800-119286400	Weak transcription	Fetal Brain Female	brain

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