Variant report

Variant	rs4946383
Chromosome Location	chr6:119304625-119304626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr6:119304409-119304926	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
FAM184A	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11967399	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11967889	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12191819	0.82[JPT][hapmap]
rs12197931	0.82[JPT][hapmap]
rs1407205	0.82[JPT][hapmap]
rs1762200	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2051056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051057	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2295709	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2357020	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2357030	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs2782575	0.89[ASN][1000 genomes]
rs2797352	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs284914	0.82[JPT][hapmap]
rs284919	0.94[CHB][hapmap]
rs2884078	0.88[CHB][hapmap]
rs3798595	0.82[JPT][hapmap]
rs4946384	0.82[JPT][hapmap]
rs57100274	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57285368	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6910327	0.94[JPT][hapmap]
rs6910850	0.84[CHB][hapmap]
rs6939937	0.80[CHB][hapmap]
rs768996	0.82[JPT][hapmap]
rs7742473	0.94[JPT][hapmap]
rs794260	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs794261	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs794262	0.89[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs794263	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs794264	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs794266	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs794605	0.83[ASN][1000 genomes]
rs794607	0.82[JPT][hapmap]
rs794614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs811201	0.82[JPT][hapmap]
rs813812	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9374757	0.87[ASN][1000 genomes]
rs9374777	0.88[CHB][hapmap]
rs9387609	0.87[ASN][1000 genomes]
rs9401113	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9401118	0.88[CHB][hapmap]
rs9481870	0.82[JPT][hapmap]
rs9489526	0.94[JPT][hapmap]
rs9489535	0.82[JPT][hapmap]
rs9489536	0.82[JPT][hapmap]
rs9489543	0.86[JPT][hapmap]
rs9489544	0.82[JPT][hapmap]
rs962393	0.82[CHB][hapmap];0.94[JPT][hapmap]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
3	chr6:119287200-119305000	Weak transcription	HepG2	liver
4	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
5	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:119288800-119315000	Weak transcription	Fetal Intestine Large	intestine
7	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
8	chr6:119292800-119308600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:119293200-119345400	Weak transcription	Lung	lung
10	chr6:119293400-119306800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:119294200-119330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:119295600-119307200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:119296800-119314600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:119299600-119314600	Weak transcription	Fetal Intestine Small	intestine
15	chr6:119300600-119344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:119300800-119319600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:119300800-119342600	Weak transcription	Brain Anterior Caudate	brain
18	chr6:119301000-119321800	Weak transcription	Placenta	Placenta
19	chr6:119301400-119308000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:119301400-119313200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:119301400-119319200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:119302200-119313400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:119304600-119305400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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